| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_15690 |
|---|
| Symbol | |
|---|
| ID | 8386902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1612473 |
|---|
| End bp | 1613927 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644975647 |
|---|
| Product | tRNA/rRNA cytosine-C5-methylase |
|---|
| Protein accession | YP_003133431 |
|---|
| Protein GI | 257055599 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.822345 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGTG ATCGGAGGGG ACGACCTCGC CCCCAGCGGG GCTATCGAGA CCGCCGTGGC
CACCGGCCCG CGCCTCGTAA GCAAGGGCCG CGCAGGCCCC CGACCCGGGA TCCCGCGCGG
CGCGCGGCGT TCGACGCCCT GCGCGCGGTG ACCGAGCGCG ATGCCTACGC CAACCTGATC
CTGCCGGAGC TGTTGCGCCA GCGCCGCATC ACCGGAAGGG ATGCCGCACT GGCTACCGAA
CTCACCTACG GCACGGCCAG GGCGACCGGG TTGCTCGACG CCATCGTGGC GCGCTGTGTC
GACCGGAAAC TGGACACAGT GGACCCAGTG GTGCGGGATG CCCTGCGCCT CGGCGCTTAC
CAGTTGCTGC GCACCCGCAT CCCCCACCAT GCCGCGGTGG CCTCCACTGT GGACTTGGTG
CGGGAGGACG CGGGTTCACG GGTCGCGGGT TTCGTCAACG CGGTGCTGCG CCGGGTGTCG
GAGAAGGACG AACAGCAATG GCTGGCGGAA CTGACGGCCG ACAGTTCCGA CCCCCTGGCG
GACCTCGCGT TGCGGACATC CCATCCCCGG TGGATCGCGC GTGCGTTCGC GGAGGCACTC
GGGGACAAAG GCGACGAACT GAGGGCGGCA CTGGAAGCCG ACGACGCGCG GCCCGCGGTG
CATCTTCTGG CCAAACCCGG ACAGATCAGT GCCGAGGAGC TGGCCGCCAT CACCGGCGGT
GACGTGGCAC CGTACTCGCC GTACGGGGTG CACCTACCGT CCGGTGGAGG CGATCTCGCT
GAGTCCGAGG TCATCGAGGA GGGACTCGCC ACGGTTCAGG ACGAGGGCAG TCAACTCGTG
GCCGTGGCCT CCGTCAACGC GCCGCTCGGT GATGCGGCTG ACGGCCGCGA CACCCGCTGG
CTCGATCTGT GCGCGGGGCC GGGCGGTAAG ACGGTGGTGC TGGGCTGTCT CGCGCAGACG
ATGGGAGCGA CCGTGGACGC GGTGGAGGTC GCCGAACATC GGGCCCGGCT GGTGCGTGAG
GCCACGGACG GCCTGCCCGT GACCGTGCAC GTCACCGACG GACGTGCTCC CGAACTGGAC
GGGGACTACG ACCGGGTGTT GGTGGACGCT CCCTGTAGCG GTCTCGGTGC GCTGCGCCGC
AGGCCCGAGG CGAGGTGGCG GAAACAGCCC GGTGACATCG CCGAGCTCAC GCGGTTGCAG
ACCGAGCTGT TGGCCTCGGC GTACCGGTTG GTTCGCCCGG GCGGCGTGGT GACGTACGTG
GTGTGCTCGC CGCACTTGGC CGAGACCGAG GGAGTCGTGA TGGCGAGTGC CCAACGTCTC
GGTGCGGAGC TGATCGACGC GCGGGTGGCG TTTCCGGGTG TGCCCCACCT CGGTGACGGT
CCGACGGTGC AGTTGTGGCC GCATCGGCAC GGCACCGATG CGATGTTCTG CGCGATGCTG
CGCAAACCCG CCTGA
|
|---|
| Protein sequence | MTGDRRGRPR PQRGYRDRRG HRPAPRKQGP RRPPTRDPAR RAAFDALRAV TERDAYANLI
LPELLRQRRI TGRDAALATE LTYGTARATG LLDAIVARCV DRKLDTVDPV VRDALRLGAY
QLLRTRIPHH AAVASTVDLV REDAGSRVAG FVNAVLRRVS EKDEQQWLAE LTADSSDPLA
DLALRTSHPR WIARAFAEAL GDKGDELRAA LEADDARPAV HLLAKPGQIS AEELAAITGG
DVAPYSPYGV HLPSGGGDLA ESEVIEEGLA TVQDEGSQLV AVASVNAPLG DAADGRDTRW
LDLCAGPGGK TVVLGCLAQT MGATVDAVEV AEHRARLVRE ATDGLPVTVH VTDGRAPELD
GDYDRVLVDA PCSGLGALRR RPEARWRKQP GDIAELTRLQ TELLASAYRL VRPGGVVTYV
VCSPHLAETE GVVMASAQRL GAELIDARVA FPGVPHLGDG PTVQLWPHRH GTDAMFCAML
RKPA
|
|---|
| |