| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4009 |
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| Symbol | |
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| ID | 5610509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4908815 |
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| End bp | 4909843 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934964 |
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| Product | porin |
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| Protein accession | YP_001475741 |
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| Protein GI | 157377141 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000245606 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000165223 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAAAAAAA CACTAATCTC TGCAACAGTT GCATCAGTAC TGACTATGGC TTCATTTGGC
GCGCTAGCCG AAGGCCCTAA CTTCTATGGT CGTCTGGACC TGTCAGTAAC TAACTCTGAC
AATGGCCTGA CTTCTCGCGA AGGTAAAGAA GGCACTGTTC TAGAGAACAA CTTCTCTCAC
GTAGGTGTTA AAGGTAGCGA AAACATCGCT AACAACATCG ACGTAATCTA CCAGATGGAA
TTCCAGGTTG AAAACACCTC TTCTAACAGT GATGTTTTCA AGGCTCGTAA CACTTTCCTA
GGTCTTAAGA CTACTGCCGG TACCGTACTT GTTGGTCGTA ACGACTCAGT ATTCAAGCAA
GCTGAAGGTG GCATTGACCT ATTCGGTAAC AGCAACGCCG ATATCGACCG TCTTGTAGGC
GCTCAGTCAC GTGTTGCCGA TGGTATCTGG TACTACTCTC CTAAGATTGC CGATCTGGTA
ACGCTTAACG CAACTTACCT GATGACTGAC AACAACCAAG CCGGTGTTGA AGATGCTGAT
GATCAGTACG CATTAAGCGC GACTATCGGT GATAAGAAGC TTAAGGCGCA AAACTTCTAC
GTTGCTGGTG CATACAACAA AGGCATCGCC GGTATGGATG CATACCGTGG TGTTGCTCAA
GTTAAGGTTG CTGGCTTCAA GCTAGGCGGT CTGTTCCAGA ACTCTGAGCA CGTTAGCAAG
ACTAACCTTG AAGGTAACAC TTACTTCGTC AACGTTGCAT ACAACCTGAA CGGCGTTAAC
CTTAAAGCTG AGTACGGTAA AGATGAAGCA GGTCTTGGTC TATACGCTAA GCGTTCTGGT
ATCCAGACTG CTGAAACGAC TGATGTAAAC ATCACTACTA TCACAGTTGG TGCTGACTAC
AAGATTGCTA AATCAACTAT GGTATATGGC CACTACGCTA TGTACGAAGG TGATTACAAG
CTTTCTGGTA TTAAGATGGA CCTAGAAGAC GACAACGTAT TCACTGTTGG TGTACGTTAC
AACTTCTAA
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| Protein sequence | MKKTLISATV ASVLTMASFG ALAEGPNFYG RLDLSVTNSD NGLTSREGKE GTVLENNFSH
VGVKGSENIA NNIDVIYQME FQVENTSSNS DVFKARNTFL GLKTTAGTVL VGRNDSVFKQ
AEGGIDLFGN SNADIDRLVG AQSRVADGIW YYSPKIADLV TLNATYLMTD NNQAGVEDAD
DQYALSATIG DKKLKAQNFY VAGAYNKGIA GMDAYRGVAQ VKVAGFKLGG LFQNSEHVSK
TNLEGNTYFV NVAYNLNGVN LKAEYGKDEA GLGLYAKRSG IQTAETTDVN ITTITVGADY
KIAKSTMVYG HYAMYEGDYK LSGIKMDLED DNVFTVGVRY NF
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