| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3849 |
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| Symbol | |
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| ID | 5611692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4693269 |
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| End bp | 4695098 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934803 |
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| Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
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| Protein accession | YP_001475581 |
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| Protein GI | 157376981 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
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| TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000408655 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACAAAC CCTTAGAAAA AGTACTCACC TCCTGGTTGA AACAACAGAA ACAAGCCTGT
GGTTTCTATC TGAATTTGAC CGTATTATTT GGTCTGTTGA CCGGTTTATC ATTAGTGGCG
CAGGCCTACC TGATTGCCAC TATTTTACAT GGGCTGATCA TTCTGGAGCT GCCCAAGGAG
CAGTTTGCTA CCCAATTCTA TTGTCTGGTG GGACTCATCT TTATCCGGGC GGGGTTGGCC
TATGGACGAG AGAGAGTCAG TTTCGAGGCG GGAAGGCGGC TTAGGGTGCA GATCCGTGGC
GCGGTTTTAG ATAAATTGAC CGAGCTTGGC CCCTGCTTCA TTAAAGGCAA ACCAGCGGGG
AGTTGGGCAA GTATCGTGTT AGAGCAGGTG GAAGATCTGC ATGATTTCTA TGCCCGTTAT
CTGCCGCAGA TCATCTTGGC GGCCTTTATA CCGCTCACCA TACTCGTGGT CGTGTTTCCG
ATTAATTGGG CCGCCGGACT GATCCTCTTG CTGACGGCGC CGCTGATCCC CATGTTTATG
GCACTGGTCG GCATGGGCGC CGCCGATGCC AACCGAAAGA ATTTCAGCGC CCTGGCTAAG
CTCAGTGGCC ACTTCATGGA CAGAATGAAG GGATTAAATA CCATCAAGTT GTTTAATCGC
GGCGACGCAG AGAGTGAGGC TATCGAATCG GCATCCGAGG AGTTCCGAGA GCGGACCATG
TCGGTACTCA GGCTGGCATT CTTAAGCTCT GCCGTGCTGG AGTTTTTTGC GGCAGTATCC
ATTGCCGTAC TCGCCGTTTA CTTTGGTTTC AGCTATCTGG ACCATCTGAA TTTCGGCCAT
TATGGCGCGG GTCTCACCCT GTTTACCGGT CTGTTTGTGC TGATCCTCGC CCCCGAATTT
TATCAACCGC TTCGAGATAT GGGGACCCAT TACCATGCAA AGGCGCAGGC GATAGGTGCC
GCCGAAGAGT TGATGGCGCT GTTAAATCAT AAAGTTGAGT CCGGCACTGA ATCGGCAAGC
GATCCACTGC TTGTTAAGGG GAAGGCTGAC CCTCTTATTA CTGAGAGCTT CAGGGCTGGA
ATATCGATTC AGGCAAGTGC CCTGTGCGTC GACAGTCCCG ACGGTACTCA GTTACTGGGG
CCGGTGGATT TCAATATAAG CGCGGGTGAG CATATGGCTG TCGTGGGGCC AAGCGGCGCC
GGTAAAACCA GTCTGCTCAA TGCATTGCTG GGATTCCTTC CCTATCGCGG AAGCCTTAAG
GTTAATGGAG TCGAGCTTAA TGCACTCAAT AAATCCCAAT GGCGTCGCCA CTTAGCCTGG
TTGGGGCAAG ATCCTCAGCT GTTTCATGGC ACCATTCGTG ACAATGTCTC CATGAGCAAG
CCCGATATGG GTGATGAGAC CGTGATGGCC TTGCTTGAGA AGGCGAAGGT CTTGAACTTC
GTTGAACGTC AAACCCATGG GCTGAATCAC CCGATAGGCG AACAGGCATC GGGCGTCTCG
GTGGGACAGG CGCAGCGTAT CGCTCTTGCC CGGGCCCTGG GCCAGGATGC TTCCCTGTTT
GTTCTCGATG AACCGACGGC GAGTCTGGAT AATCACAGTG AGCAAGCGGT ACAGACGGCG
CTTAGAGAGG CGATGTCGGG GAAAGCTTGC CTGATGGTGA CTCACAGGCT GGATCAGCTG
CACACGATGG ATACCATCTT AGTGCTGGAT AGGGGACTTG TGGTACAGCG AGGGAGTTTC
GATGAGTTAG ACCAGAATCA GGGTCTGTTT AAGCAGATGC AGGAAGAGAG CAATGATGAG
TTTACTAACC TGAAGGGGCT TAACCGATGA
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| Protein sequence | MDKPLEKVLT SWLKQQKQAC GFYLNLTVLF GLLTGLSLVA QAYLIATILH GLIILELPKE
QFATQFYCLV GLIFIRAGLA YGRERVSFEA GRRLRVQIRG AVLDKLTELG PCFIKGKPAG
SWASIVLEQV EDLHDFYARY LPQIILAAFI PLTILVVVFP INWAAGLILL LTAPLIPMFM
ALVGMGAADA NRKNFSALAK LSGHFMDRMK GLNTIKLFNR GDAESEAIES ASEEFRERTM
SVLRLAFLSS AVLEFFAAVS IAVLAVYFGF SYLDHLNFGH YGAGLTLFTG LFVLILAPEF
YQPLRDMGTH YHAKAQAIGA AEELMALLNH KVESGTESAS DPLLVKGKAD PLITESFRAG
ISIQASALCV DSPDGTQLLG PVDFNISAGE HMAVVGPSGA GKTSLLNALL GFLPYRGSLK
VNGVELNALN KSQWRRHLAW LGQDPQLFHG TIRDNVSMSK PDMGDETVMA LLEKAKVLNF
VERQTHGLNH PIGEQASGVS VGQAQRIALA RALGQDASLF VLDEPTASLD NHSEQAVQTA
LREAMSGKAC LMVTHRLDQL HTMDTILVLD RGLVVQRGSF DELDQNQGLF KQMQEESNDE
FTNLKGLNR
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