Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3466 |
Symbol | |
ID | 5613532 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4217288 |
End bp | 4219645 |
Gene Length | 2358 bp |
Protein Length | 785 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934406 |
Product | hypothetical protein |
Protein accession | YP_001475198 |
Protein GI | 157376598 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.724503 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGAT TCGATATGAA GGTTGCTACA TTAGCAACAT TAATCGGTCT GGCACTTTCC GGCTGTAGTG GCGATGATGG TAAAGATGGA GTAGATGGCA ATGACGGCAC GCCAGGTACT CCGGCCATTA TTGTTGCAAC CAGTGCGCAA AGTTTGAATG TGACAGTCGA AAAGGTGGCC ATCGCCAGTG ACTCTGCTGT CACTTTTATG GTGACCAATG AGAAAGACTT ACCTGTCGTT GGCTTGAGCC ATTTCGGCTT TATGCTCTCC GGCCTTGAGG AAGGCGAAAA TGGTGATGCC AATAACTGGA AACTACTGAG CTCAGAATCG TGTCCGGACA GCAAATATGC CAAGTGTGGC ACGCTGACCG ATAATGGTGA CGGTACTTAT AATTACCACT TCCTTAAAGA TGTGACTGCT GAGCCAGCAT TTACTATCAA CGATGACAAG ACACTGCGTC TGATGGTCAA TACCGGTGGT GAAAAAGTAG GGGCTTCAGA GCTGCCTTAC GCCAATATGA ACTATGATTT CCGTGCTCAG GGCGAAACCC CTCTGTACAC CAAGAATGTG GTCAACAACC AGAACTGTGA AAGTTGTCAT GATGATTTTA CCATTCATGG CGGACATTAC ACTGAAGTGG AGACTTGTGT ATCTTGTCAT ACAGACAACA AGGTCAGCAG CAGTGAAAAA GTGTTCCCAA TGCTGGCTCA TAAGGCTCAC ATAGGTGTTA TCTCAGCACC AGTCGGTGGT TGTGATAACT GTCACTCTGA AAATGAGCAG GCGACAGATT ACGCCAACTG GAAGAGCGTA CCTACCCAAG AAACATGTAT TACTTGTCAT ACAGACGTCA ACTTCAAGGA AGGCGTTGGC CACTGGCCGT ATCAGGACAA TGCACAATGT GCCAATTGTC ACACGCCTGA TACCCTCGAG ATGGTGCATT TGTCTACCTA TAAGGGACAA AACGAGCGCC GTAACAATCT TCACCTGACC GTGACCGAAG CCAAGATGGT TGATGCTCCG GAAGCAAAAG CCAACATCGA CGCCAACCTG GATACCGATA AGACTGGCTA TGTACAGCTG ACAGTCGACA TTCTGGACAA AGATGGCATC ACGCGTAATG AGCAGTTAGA TTTGGTTAAG TACATGTACT ACGCCGAGTT CTATATCAAC TGGGGTGGCC AGGATATGGG CATGGAGCGT GGTAAGGTAC TGCGTGTTCA TACCAACAAA GAAAACTTCC CGGGTTATGT TGATGAGCCA ATCGTGCTTA ACTATGAAAA TGGTAAGACA ACGTTTGAAA TTGGTCCATT CGATCTTGAG GATGACTTCG ATGGTGACTT GAACGATAGT TACGGCATGG TGACGCCGCG TATCTGGTTC TGTATCGACA AAGATGGTGA AACAATCCAG GACTGTGATG GCAAAACTGA TTGGAGTAAC GGTGCGGCTG GTTATAACTG GCAACACTTC TTCAATAAGG AAGGCATGCT GGAAGAGCGT CCACGTCGTC AGATCGTGAC CAATGAGCTG TGTGGTGATT GTCATGGTAC GACTACCTCA GAAGATGGCT TCGTACAGAT GACTCTTAAC TGTCGTAGCT GTCACTCTGT GGTCAAGAAC GATAGTACCT ACTTCGGTAC CACTTGTGCT TCGGGCTCGG TCGATTCCGA TGGCGATGGT GCTTTGGATC CAATGATTAT GATGAAGAAT CTGATGCCAC GCGGCGAGCG TGACTGGACT ACTGCATCGA ATGCCGGTGA AGAATGTCTG GCCTGTCATA ACGCCAACAA TATGCCTACT CAGGTCATAC GTAATTCGCA AACCAAGCAA GGTGATGAGG ATTACGTTGA GCAGCTGACT ATGAGTCATC CTGATCAGAA GGTATGGATC CATGCTATGC ATGCTAACAA CCGTGCTAAC CAAAGTGGTG AAGGTTGGAA GCGTAATGTT GAGTACTCGG CAGATCTGGC AAACTGTGCC AAGTGTCATA TCGCAGACAG CTTCGATGCC AAGTACCTGG TGGGTCGTAA GCCGCTAGCG CTGGATCTTG ACTACATGGA TACCTATGAC GGTCTGGACC CTGCAAATGG TAAAGACACC AGCGGTAACA AGCGTTATGC CGTCGATGCG GTTGCAGATG CTTTTGTATC GCCTACCGCC GCCGTATGTT TGAGCTGTCA TGGCAAGCGC GCTGCGACAG AGGGTGAAGA TCGCCGTCAA GTCCGGAAAG ATGTGGTCAG TCATATGAAG CAAAATGGGG CTCAGTTCGG TGTCGAACTT GGCCAGTACA CAGGCGAAGA GTCTTGTGCA GTCTGTCACG ACCTGACCAA TTTGAAAGAG GTTCATGGTC TGAAGTAA
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Protein sequence | MKRFDMKVAT LATLIGLALS GCSGDDGKDG VDGNDGTPGT PAIIVATSAQ SLNVTVEKVA IASDSAVTFM VTNEKDLPVV GLSHFGFMLS GLEEGENGDA NNWKLLSSES CPDSKYAKCG TLTDNGDGTY NYHFLKDVTA EPAFTINDDK TLRLMVNTGG EKVGASELPY ANMNYDFRAQ GETPLYTKNV VNNQNCESCH DDFTIHGGHY TEVETCVSCH TDNKVSSSEK VFPMLAHKAH IGVISAPVGG CDNCHSENEQ ATDYANWKSV PTQETCITCH TDVNFKEGVG HWPYQDNAQC ANCHTPDTLE MVHLSTYKGQ NERRNNLHLT VTEAKMVDAP EAKANIDANL DTDKTGYVQL TVDILDKDGI TRNEQLDLVK YMYYAEFYIN WGGQDMGMER GKVLRVHTNK ENFPGYVDEP IVLNYENGKT TFEIGPFDLE DDFDGDLNDS YGMVTPRIWF CIDKDGETIQ DCDGKTDWSN GAAGYNWQHF FNKEGMLEER PRRQIVTNEL CGDCHGTTTS EDGFVQMTLN CRSCHSVVKN DSTYFGTTCA SGSVDSDGDG ALDPMIMMKN LMPRGERDWT TASNAGEECL ACHNANNMPT QVIRNSQTKQ GDEDYVEQLT MSHPDQKVWI HAMHANNRAN QSGEGWKRNV EYSADLANCA KCHIADSFDA KYLVGRKPLA LDLDYMDTYD GLDPANGKDT SGNKRYAVDA VADAFVSPTA AVCLSCHGKR AATEGEDRRQ VRKDVVSHMK QNGAQFGVEL GQYTGEESCA VCHDLTNLKE VHGLK
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