| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3286 |
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| Symbol | |
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| ID | 5610034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3989985 |
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| End bp | 3992129 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934224 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475018 |
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| Protein GI | 157376418 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.909593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000468411 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAATC AAATAAACAA GAGCTTCGTT CTGAGTCTTA TCATGACTGG AATGATAGCG
GGTTGTAGCG ATGGTAAAGA TGGAGCCGAT GGTTCCGACG GTGGAAGTGG CATCATTATC
GCAAAATCAG CCGAAAGCTT ACACCTGGAG TATCTTGAAT ATGGTATCGA TGATGCCGGC
ATGCGTTCTG CGAGCTTTAA GATCACAAAT GAACTTAATC AGCCTGTGGT CGGTATCGGT
TCGGTTCGCT TCCTGAGCTC ACAACTGGCC ACATCGGAAC AAGGCTATAC CGAACGCCAG
GGCTTAGGGT ATGTCACCTG TACCAGCGAA GCTGAAGACT GCTTAACGGA TCATCAAGAT
GGATCTTATA CCGTAATCAA CACCACTCCC GTAAACGAGC TTGATTTGAG TGGAAAGGAC
TATACATTTA ACCAAGATCT TCCACACCGC TTCATGGTTC GCCTACAAAC CTATGGCGGC
ATTCCGGTCA TTGGCAGTGT ACAAGACATC ATGCCTGAAG TGGACTTTAT GATGGATGGT
TCGGCGGTGA CAACCACTCG TTCAATGATC GACACTGCAA GCTGTAATGC CTGCCATACC
GATATCGCAT ATGCCCGTTA TGACAGCTAT GATCGCTCTC CACATTACGC CAATAATGTA
CAAGCATGTG CGACTTGTCA TACGACAGGT GAAAAAGACT CTAAAGGCAG TATGGTTGAA
CGCGCTCACC GCTGGCATAA CGGCCTCGAT GGCGAGCTTG TCATTAGCTC ATATGATTGC
ACCAGTTGTC ATGTCACCGA AGCCACCGAC GCCCTTCCAA ATGGCGCAGA ATGGTTAGCA
AATACCACGA ATGATAAAGC TTGTTTAAGC TGCCACGCGT CTGAAGAGCT AAAACATGGT
CCAGAGATGC AATTCTCATG TGCCACTTGT CATGATGTAG CCCAATATCA CCTGACTAAG
GTCGACGCGA AAAAAGCGGC ACGTGATGCT TATAGTGTCG ATGTAACCCA AGTTTCAACC
CTACAAGGCA CCTCTGTTCG TGATGGCAAC AGCTACAACA CGGCTGAAAT TACCTTCACC
GTGAAAATTC TGGACAGTGA AGACACGCCA TTAGCCACCA GTCCAAAAGA AGCCAAGGTA
TTTAATGCCC TTCGCGCCTC AGTTTCATGG GACATGGAAG CGGGCTACCG CATGTTAACC
ACTGAAACTA AAGACTCGGG TGAACTAGGC CGCTTAGCCA ACCACTCCGT TAACTTCAAG
TTTGAATCTA TTGACCCTGT TTCATCTAAC CCTGCAACCG GTGAATACAC CTACATCATT
TCCGGTCAGC TTGATGATGA TAAATCTAAG AACTCAACCG GTGTGATCAT TCCTATCGGT
ACCGATCTCA AAACGGGGAT CTTAGCGATT GAGGGACAAG TTAAGGCCGA TGAAAAAACC
GGTGTTCCAA CTCCTGATGG CACCTTGGTT GAGCGTATTC GCTCTAAATC AGTCTTCTTT
ACCTTAGAGG GACTCACCGA TAATAGCCGT CGCCAAGTTG TAGATAATGC ACTGTGTGCA
TCCTGTCATG GCGATCAAGC GTACGGTTAC CACGGACGTC GTAATGACTT AGAGCAGCAG
TGTGTCGCTT GCCATAACTT AGGCAATGCC GAGTGGGATA AAGGTCATAT GGCACTGGAG
CAGGCACCAG CAGACCCGGT ACTCGACCAT ATCTCATGGA ACACCTTTGT TCATGCCTTA
CATGCACAAA ACCGTGAAGA ACAGAATATG GGTGAAGCAT CAAACCGTGT ATTTAAGTAC
CCTGCACGCT TAAACGATTG TTCTCAGTGT CATGTTGATG GCAGTGCCAA CCTTAAAGAG
ATTGAGAAGT CGAATGCACT AATCACACGT AATACCCATG AAGTCGACGC CGACTTCTTT
GCCACCAGCC CGGGAGCCGC GACATGTTGG TCTTGCCATG GCCCATATGG CGGTGATTCA
CTTAAGAACC ATATGATTCA AAATGGGGCT GATTTTGAAA TGAAGCTTGA AGATGGTGTG
AATGCCACTT TCGACGGTGA TGTCGTGGTC GATGTAACAC TATCTGGCGA GGCTTGCTCA
GTGTGTCACT CCAGTGACAA GTTAGCAGAG TCTCACCGTT TCTGA
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| Protein sequence | MKNQINKSFV LSLIMTGMIA GCSDGKDGAD GSDGGSGIII AKSAESLHLE YLEYGIDDAG
MRSASFKITN ELNQPVVGIG SVRFLSSQLA TSEQGYTERQ GLGYVTCTSE AEDCLTDHQD
GSYTVINTTP VNELDLSGKD YTFNQDLPHR FMVRLQTYGG IPVIGSVQDI MPEVDFMMDG
SAVTTTRSMI DTASCNACHT DIAYARYDSY DRSPHYANNV QACATCHTTG EKDSKGSMVE
RAHRWHNGLD GELVISSYDC TSCHVTEATD ALPNGAEWLA NTTNDKACLS CHASEELKHG
PEMQFSCATC HDVAQYHLTK VDAKKAARDA YSVDVTQVST LQGTSVRDGN SYNTAEITFT
VKILDSEDTP LATSPKEAKV FNALRASVSW DMEAGYRMLT TETKDSGELG RLANHSVNFK
FESIDPVSSN PATGEYTYII SGQLDDDKSK NSTGVIIPIG TDLKTGILAI EGQVKADEKT
GVPTPDGTLV ERIRSKSVFF TLEGLTDNSR RQVVDNALCA SCHGDQAYGY HGRRNDLEQQ
CVACHNLGNA EWDKGHMALE QAPADPVLDH ISWNTFVHAL HAQNREEQNM GEASNRVFKY
PARLNDCSQC HVDGSANLKE IEKSNALITR NTHEVDADFF ATSPGAATCW SCHGPYGGDS
LKNHMIQNGA DFEMKLEDGV NATFDGDVVV DVTLSGEACS VCHSSDKLAE SHRF
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