| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3034 |
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| Symbol | |
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| ID | 5613366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3667387 |
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| End bp | 3668862 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933971 |
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| Product | alkaline phosphatase |
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| Protein accession | YP_001474766 |
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| Protein GI | 157376166 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.513893 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00921345 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGTAG CAAAACCCCA GGGGACGATG CTAGGGCATC CGAAGGGATT GTTCCTGTTG
TTTACAACAG AGTTATGGGA ACGATTCAGT TATTACGCAA TGCGTGCCAT TTTGGTGCTG
TATTTGGTAG ATAAAGTACA AACAGAAGGT GGTCACGGTT TAGGTTGGAC CAGCGCAGAC
GCAATCTCAC TCTATGGTAC ATTTACCGGT TTAGTTTATC TGACTCCCCT CATCGGTGGC
TGGTTAGCCG ATACATATCT GGGTCAACGC CGCGCCATCA TGATTGGTGG TGCTCTGATG
GCAGCCGGTC AATTCATCCT TGGTACACCA CATGCGTGGG TACAGGGAAT GGAGACTCAA
GTTTTCTATC TTGGTCTTGG CGTACTTATT CTAGGTAACG GCCTGTTTAA GCCTAACATC
TCTACCATGG TTGGTGACCT CTATGAAGAG GGCGATCATC GTCGTGATGG CGCGTTCACT
ATCTTCTATA TGGGTATCAA CGTCGGTGCT TTCCTTTCGG GTATCATTGT AGGTTCGGTT
GTCAGCGCCT ATGACGGCAA CTTCCAGATG GGCTTCCTCT GTGCCGGTAT CGGTATGGTC
TTCTCTTTAA TCATTCAATT TGCCTTCGCA CAACGTTTAC TCGGTGATAT CGGTAAACAC
CCGGCTGCCA AACTTGAGAA AGAGAAAGCG GCAGCCAACG GTCAAGAAAA TGTAAAAAAA
GAACCTTTGA CCAAGGTTGA GCGTGATCGC ATTAAGGTGA TCATGGTCAT GGGTCTGTTC
ACTATCATCT TCTGGGCTGG TTTCGAGCAA GCCGGTGGTC TGATGAACCT GTTCACCAAC
GACTTTACCG ACCGTATGAT TGGTGGCTGG GAAGTGCCGA CCACTTGGTT CCAATCATTG
AACGCCATGT TCATCGTGAT TTTCGCGCCG GTGATCGCCT CTATCTGGAT CCGCTTGGGT
AAGAACGAGC CGAACTCTCC GGTTAAGTTT GCCTTAGGTC TGGTACTGCT TGGTGTTGGT
TTCCTATTTA TGATTGGTGC CGTACTTGAG ATGGGTGGTA ACCCGGATGC TAAGTCAAGC
ATGTGGTGGT TAGTAGGTGC ATACTTCTTC CATACTATGG GTGAGTTATG TCTGTCTCCT
ATCGGTCTGT CTATGGTGAC TAAATTGGCT CCGCTTCGCA TCGCATCTTT GATGATGGGT
GCCTGGTTCC TGTTCGTTGC TGCTGCAAAC AAGATTGGTG GTATCGTAGG TTCATTCATT
GGACACGGCG GACCAAAAGA GGAGCAGCTT GCTAACGCAA TGTCTATCTT CGCCGGTATC
GCCATCACAT CGGCTATTTC GGGTATCATC CTCTACTTCA TGGCTGACAA GCTAGTAAGC
TGGATGCACG GTGCCGAAGG CCCGCATCAT ACTGAAGAAG AAGCTCTGGA AGAAGAGATC
GCAGTGACTG CAGAGCATGA AGGTATACAG CGTTAA
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| Protein sequence | MSVAKPQGTM LGHPKGLFLL FTTELWERFS YYAMRAILVL YLVDKVQTEG GHGLGWTSAD
AISLYGTFTG LVYLTPLIGG WLADTYLGQR RAIMIGGALM AAGQFILGTP HAWVQGMETQ
VFYLGLGVLI LGNGLFKPNI STMVGDLYEE GDHRRDGAFT IFYMGINVGA FLSGIIVGSV
VSAYDGNFQM GFLCAGIGMV FSLIIQFAFA QRLLGDIGKH PAAKLEKEKA AANGQENVKK
EPLTKVERDR IKVIMVMGLF TIIFWAGFEQ AGGLMNLFTN DFTDRMIGGW EVPTTWFQSL
NAMFIVIFAP VIASIWIRLG KNEPNSPVKF ALGLVLLGVG FLFMIGAVLE MGGNPDAKSS
MWWLVGAYFF HTMGELCLSP IGLSMVTKLA PLRIASLMMG AWFLFVAAAN KIGGIVGSFI
GHGGPKEEQL ANAMSIFAGI AITSAISGII LYFMADKLVS WMHGAEGPHH TEEEALEEEI
AVTAEHEGIQ R
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