| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2180 |
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| Symbol | |
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| ID | 5613805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2635886 |
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| End bp | 2638309 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933084 |
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| Product | putative ATP-dependent protease La-relatedprotein |
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| Protein accession | YP_001473917 |
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| Protein GI | 157375317 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1067] Predicted ATP-dependent protease |
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| TIGRFAM ID | [TIGR00764] lon-related putative ATP-dependent protease |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAT TTCCTCTTGT CTCCCCTCTT AGTAGTGACC AGCTCTACCG AACATCTGAA
CTTTCGGATC TCGCTCCTGA ATTCAAATCC ACCAAAAACT TAAGCCCTAT CAATGAAATA
GTGGGTCAGG AACGCGCTCA ACAAGCGGTT GAGTTTGCGA TGTCCATGAA GGATAAAGGC
TACAATATCT ATGCTATCGG ACGTAATGGC TTAGGCAAGC GCACTATGGT ACTGCGCTAC
CTCAACCGCC ACGAACCAAA TGGTAATGGG CATACCTTAT ATGACTGGTG TTATGTCATT
AATTTCGACG AGGCCCGTAC GCCTAAAGTG CTGAAACTGC CCGCAGGCAC TGGAATGGAG
CTAAAAAAAG ACATAGAGAA GCTCATGTTA CGTTTAGTCA AAGCCCTGCC GCTCGCTTTT
GACAACGAAA TGTACTACTC CCGCGCCGAA AAACTCAAGG GGTTACTCGC CCAGAAACAG
GAGTCCGCTT TGCTGGGGCT CACCAATGAG GCAAAAGAGT CCAGTATCAG CCTGACTATT
ACCCCGCAGG GTAGCTATGA ACTGGTCGCC ATGAATGGTG AGGAACCCTA TACAGAAGAA
TCCTTCGCTC AGCTGCCTAA GAAGAATCAA GATAAGTTAG AGACGGCCAT TACCTCACTG
GAGTCGAAGC TCAGGGTTAT CGTCAGGAAG TTTACGGTTT GGGAAGAGGA GTATTCCGAA
AAGCAGCTCA AGCATGATGA GCAGGTCGCT CAAGATGTAT TGGCTCACCT CACCGATAAG
TTAAAAGATA AATACAGTAG CTTACCCGCA GTGAAAAGCT ATCTGTCTGG CATGCACAAA
GATGTTATTG ATAATTTAGA CCTTTTCCTT GAAGAGAACG AGGAGCAATT GGCACTCTCC
TACGCCTCAC TCGACAAGAA GATGCCAAGA CGTTATCAGA TCAATGTATT AGTAGGCCAA
GATACTGAGA AGATGCCGAT CCACATTGAG GAGACGCCTA ACTATCACTC TATTTTTGGC
TACATAGAGA ATGCGACCTT CAAAGGCACC ATCTTTTCTG ACTTCTCACT CATCAGACCC
GGAAGCCTGC ATAAAGCCAA TGGCGGCGTG CTAATGATCG ACGCGATTAA GGTACTCGAA
CAACCCTACG TTTGGGATGG GCTTAAACGC GCATTAAGAT CGAGAAAACT CAGCCTGAGC
TCACTCGAAC GTGAAGTCAC CTTATCAGGG ACTATCTCAT TGGATCCTGA GGCTATCCCT
TTAGATATCA AGATTATCTT GCTTGGCGAT TATCAGACCT ATCAGCTTCT ACAACACTAC
GACCCTGAGT TCAGTGAGCT ATTCAGGGTT ACCGCAGACT TCGAAGACGT CATGCCACGC
ACACAAAAAT CAGAAGCACA ATACGCACAA TTTATCTCGA GTATTATTCA CGGTAATAAG
ATGCTTCATT GCGACCGTGG TGCGATAAAG CGCATTATAG AATTCAGCTC CCGACAGGCC
GATGATCAAA ACAAACTGTC TCTGCATTCC GCCGATATTG CCAATCTGCT TCGAGAGTCT
AACTATTGCG CTCGTGCGGT TAAGGCCAAT ATGATCCGCG CCAGCCATGT GGATCAGGCA
CTGCATAATC ATGAGCTCAG GGTATGCCGT CTCAAAGACA ATGTGATGCA GAGTTTTGTC
AATGGTACCA CCTTGATAAG TACTCAGGCC CATGCCATCG GGCAGGTCAA CGCCCTGTCT
GTAATTGCGA CTTCAGATCA CCAATTTGGC GCGCCTAACC GGATAACCGC AACCACGGCA
TATGGCGAGG GTAAGGTGTT CGATATCGAA CGAAAGGTCG AACTCGGTGG CAGTTTACAT
TCCAAGGGGG TGATGATCCT CTCGGCTTAT CTGGCCTCTA TCTTAGGCAA AACGGCTAAG
ATCCCCCTGA CGACTCACCT CACTTTCGAG CAGTCCTACG GCGGCGTCGA TGGTGATAGC
GCTTCGATGG CGGAACTGTG TGCCATGGCG TCGGCGTTCT CTCAACAGCC CATCAGACAA
GATATCGCTA TTACAGGCTC AATGAACCAA TTTGGCGAGG CTCAACCTAT CGGCGGCGTC
AATGAAAAAA TCGAAGGCTT CTTCGATGTT TGTGCCATCA AAGGACGCAA GGCGACTCAG
GGGGTGATTA TTCCTCAATC TAATGTCCAA AATCTGATGC TTCGTAAAGA TGTCGTCGAA
GCGGTTAAGA AAGGCAAGTT TAATATTTGG GCAATCGAGC ATGTCACCCA GGCCATAGAA
CTTCTGACCG GTATCCCTTC AGGAATGAAT GTCAAAGGCA GCGGTAAAAA AGCGTCATAT
CCCGATAACT CTATCTTCGG TATGGCTCAA GCCCGATTGG AAAAATTGAG AGAGAAGCAC
TCACGGGTGA GAAAAGGAGA ATAA
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| Protein sequence | MKTFPLVSPL SSDQLYRTSE LSDLAPEFKS TKNLSPINEI VGQERAQQAV EFAMSMKDKG
YNIYAIGRNG LGKRTMVLRY LNRHEPNGNG HTLYDWCYVI NFDEARTPKV LKLPAGTGME
LKKDIEKLML RLVKALPLAF DNEMYYSRAE KLKGLLAQKQ ESALLGLTNE AKESSISLTI
TPQGSYELVA MNGEEPYTEE SFAQLPKKNQ DKLETAITSL ESKLRVIVRK FTVWEEEYSE
KQLKHDEQVA QDVLAHLTDK LKDKYSSLPA VKSYLSGMHK DVIDNLDLFL EENEEQLALS
YASLDKKMPR RYQINVLVGQ DTEKMPIHIE ETPNYHSIFG YIENATFKGT IFSDFSLIRP
GSLHKANGGV LMIDAIKVLE QPYVWDGLKR ALRSRKLSLS SLEREVTLSG TISLDPEAIP
LDIKIILLGD YQTYQLLQHY DPEFSELFRV TADFEDVMPR TQKSEAQYAQ FISSIIHGNK
MLHCDRGAIK RIIEFSSRQA DDQNKLSLHS ADIANLLRES NYCARAVKAN MIRASHVDQA
LHNHELRVCR LKDNVMQSFV NGTTLISTQA HAIGQVNALS VIATSDHQFG APNRITATTA
YGEGKVFDIE RKVELGGSLH SKGVMILSAY LASILGKTAK IPLTTHLTFE QSYGGVDGDS
ASMAELCAMA SAFSQQPIRQ DIAITGSMNQ FGEAQPIGGV NEKIEGFFDV CAIKGRKATQ
GVIIPQSNVQ NLMLRKDVVE AVKKGKFNIW AIEHVTQAIE LLTGIPSGMN VKGSGKKASY
PDNSIFGMAQ ARLEKLREKH SRVRKGE
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