| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1890 |
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| Symbol | |
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| ID | 5611075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2276346 |
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| End bp | 2276822 |
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| Gene Length | 477 bp |
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| Protein Length | 158 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932776 |
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| Product | 17 kDa surface antigen |
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| Protein accession | YP_001473629 |
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| Protein GI | 157375029 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3133] Outer membrane lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.219648 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000108744 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTTGAAAC CTAGTATTAG TCGCTTATTC TACGTTTGCT TGTTTTTTAG CATATTTTTG
CCGGCGCATG CCGATTATGA TCGTAACCAG GCTGTACCCG TTGAGAAAGT GGTCTACGGT
AGTATTGTTT CTGTCAGGAA TATCACTCAG AAACAGCTGG TAGAGGATAG AAATCAAGGC
TGGAAAACCT TCGGTGGTGC CCTTATTGGT GGTGTCGTCG GTCATCAATT CGGTGGTGGA
AGCGGCAAGG ATGTTGCGAC CGTACTCGGT GCACTGATTG GTGCCGGGAT TGGCAACCGT
CATGGTGACT CGAGTTATGT CCAGGAATTA AAATTGGTTG AATTAATGAT AAAGCAAGAT
GATGGCGAGC AAGTGATGAT TATTCAGGAC TTAGACCCGG GAATGGTTTT CAATGCAGGG
GATGAAGTCC GGGTGGTTTA TCTTCAAGGT GGCGTAAGAG TCGATCGTGC CATGTAA
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| Protein sequence | MLKPSISRLF YVCLFFSIFL PAHADYDRNQ AVPVEKVVYG SIVSVRNITQ KQLVEDRNQG
WKTFGGALIG GVVGHQFGGG SGKDVATVLG ALIGAGIGNR HGDSSYVQEL KLVELMIKQD
DGEQVMIIQD LDPGMVFNAG DEVRVVYLQG GVRVDRAM
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