| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1568 |
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| Symbol | |
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| ID | 5612555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1871461 |
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| End bp | 1872672 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640932438 |
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| Product | porin |
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| Protein accession | YP_001473307 |
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| Protein GI | 157374707 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000403403 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000152354 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAGA CTCTAGTAGC ATCCGCATTA GCAGCCGTTA TATTTGTTCC GTCGGTATCG
GCAATCGAGA TCTATAAAGA CGACAAAAAT GCCGTTGAGA TCGGTGGATG GATGGATGCG
CGCATCATCA ACACTCAAGG GGCTACAGAA GTGGTAAACG GTGCATCTCG CATCAATTTT
GGATTTACCC GTGAAATGAG CGATGGATGG AAAGCATTCA CAAAGCTCGA GTGGAGTGTT
AACCCGTTTG GAAACAGTGA CATTGAATAT AACAATGACA GTGCTTTTTC TTCTGAAAGT
GATGAATTTC TTCATAATCG TCTAGGTTAT GTCGGTCTTG GTCATGATAC ATACGGTAGC
CTGACAATAG GTAAGCAGTG GGGCGCTTGG TACGACGTAG TTTATAACAC TAACCTAGTG
AACACTTGGG ATGGTAACGC GTCAGGTACT TACACATATA ACAAAGCCGA TGGTGCTATT
AATGGTACTG GTCGTGGTGA CAACACCGTT CAATACCGTA ATGCATTTGG TGATGTTAGC
TTCGCTCTAC AGGTGCAATT AAAGCAAGAT AGCTTTGATT TGACAGAAAG CTCGCTGGAT
AATAATTCAA ACCCTTTCCC AACAGCTGAT AAAAACTTCA TGACTGGAAG CTCTACAGCT
TCTACTAGTG AAACTATTGC AACGGTTGAA TACAACAATA CCGTTGGTGG TTCTATCACT
TATGCCGCAA CAGATATGCT AACACTTACG GCTGGTTTCA ACTTAGGTGA ATTTGACGGT
ACCATGGCAT CGGGCGAAGG TATCTCTGAA ACAGATTACA TTTATGGTGC TGGTTTGACT
TGGGGTGGAT TTGAGCAACC AGGTTTCTAC GCTGCGATCA ACATCAACAA GAACGAGTTC
CATGATACAG ATAACATGGG CCGCTTGATG CACGACGCTG TAGGTCTTGA GTCACTGTTC
AGCTATAAGT TTGACAATGG CCTTAAGCCT ATCTTTGCTT ATAACTACCT CAAAGCTGGT
GACGCATACG AAGCATTTTA TAATGATGGC GAATTTAAGC GTCAGTTCAT CGTCGCTGGT
CTGCATTTTG TTTGGGACGA GCAAACAATG CTTTATATAG AAGCACGTAA AGATATGAGT
GAATTCAATG CTGGTAACCA AACTCCAGAT GAGAGTGATG GTGTTGCAAT TGGCATAAGA
TATTACCTGT AA
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| Protein sequence | MKKTLVASAL AAVIFVPSVS AIEIYKDDKN AVEIGGWMDA RIINTQGATE VVNGASRINF
GFTREMSDGW KAFTKLEWSV NPFGNSDIEY NNDSAFSSES DEFLHNRLGY VGLGHDTYGS
LTIGKQWGAW YDVVYNTNLV NTWDGNASGT YTYNKADGAI NGTGRGDNTV QYRNAFGDVS
FALQVQLKQD SFDLTESSLD NNSNPFPTAD KNFMTGSSTA STSETIATVE YNNTVGGSIT
YAATDMLTLT AGFNLGEFDG TMASGEGISE TDYIYGAGLT WGGFEQPGFY AAININKNEF
HDTDNMGRLM HDAVGLESLF SYKFDNGLKP IFAYNYLKAG DAYEAFYNDG EFKRQFIVAG
LHFVWDEQTM LYIEARKDMS EFNAGNQTPD ESDGVAIGIR YYL
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