Gene Ssed_1225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1225 
Symbol 
ID5614197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1459172 
End bp1461013 
Gene Length1842 bp 
Protein Length613 aa 
Translation table11 
GC content47% 
IMG OID640932078 
Producthypothetical protein 
Protein accessionYP_001472964 
Protein GI157374364 
COG category[S] Function unknown 
COG ID[COG4805] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000182029 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.162619 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTATAA GAACAAAAAT CAGCATACTC GCCCTAGCTT TAACCACCAT TATCGGCGGC 
TCAGCCATTG CCACCCCTTC GCAACCTCCT CTAAGCCCCG GTGAACCCTT AACACAAAAA
GCTGAAAATG AATCAAAGAA GGCGAATGCA CTGTTTGAAA TCATCTTCAT GGAAAATGTG
ATGCAGAGTC CGATATCTCA GACTCACTTA GGTATCAAGA ATGACTATGA TAAGTGGGAT
GAAAGAGGTG AGGAAGCCGA CTCTAATTCA CTGGAGCGCA CCAAACGTCA TCTCACACAG
CTTGAGCAGA TTGATGTCTC CAAGCTCGAT GAGCAAACGC GCCTCAGCTT TAATCTCCTC
AATCAAAAAC TGAAGCAGGA AGTTAAAGAC TATCAATGGC GCTTTCATAA TTACCCGGTC
AACCAGATGC ATGGTGGGCA CACTATGGTC GCCTCTTTTT TAATTAATCA GCACCAGATC
GACAGCCAGT CCGATGCCGA GGCTTATATT GCTCGACTTC AGGGAGTACC TGAATACCTT
GACCAACTGG AAAGAGCACT GGAGATCCGG GCGGAAAAAG GCATTATTGC CCCACGCTTC
GTATTTCCCC ATGTCCTATC TGGCAGCAAG AACATCATCG AAGGGGCACC ATTCGACTCC
GGCGAAGACA GTGCAATCTG GGCCGATTTC AAACGTAAAG TTGAGGCGCT GGAGATAGAA
AGCAAAGATA AGAAGTTGCT GTTGAGTGAT GCCAGACAAG CCCTGTTGAC CCGGGTTAAA
CCTGCTTACG AAAAGCTTAT CAGCTATATC GTTAGACTCG AAACTAAGGC TGATAGCCGT
GATGGAGTTT GGAAGTTTCC TCTGGGCGAA CAGTACTATA ACAACGCATT GGCACGCACC
ACGACGACCG ATATGACAGC CGAGCAGATC CACGAACTGG GTCTGAAGGA GGTCGCTCGT
ATTCATAACG AGATGCGCGA GATCATGAAG AAAGTGAATT TCGAAGGTGA CCTTCCCGCC
TTCTTTAAAT TCATGCGAGA AGATAAGCAG TTCTATTACC CCGCAACGGA TGAGGGACGT
GATGCCTATT TACACCAGGC TATCACACTT ATAGACACCA TCTCTTCCAG GTTAGATGAA
GTGTTTAACG TTAAACCTCA AGCACCTATG ATTGTGAAAC GCGTTGAAAC ATTCAGAGAG
AAGTCGGCAG GTAAGGCTTT CTATAATCAA CCTACTCCCG ATGGCAGCAG ACCCGGCACT
TACTATGCGA ACCTCTATGA TATGGAAGCC ATGCCTAAGT ATCAGATGGA AGCATTAGCC
TATCATGAGG GGACACCAGG GCATCATATG CAGATAGCCA TTGCACAAGA GCTTGAAGGA
GTACCCAAAT TCAGAAAATT TGGGGGTTAT ACCGCCTATA TCGAAGGTTG GGGGCTATAC
AGTGAGTTTT TCCCGAAAGA GATGGGACTC TATTCCGATC CCTACTCTGA TTTCGGTCGC
CTCGCGATGG AGCTATGGCG CTCTTGCCGA TTAGTTGTCG ATACAGGTAT GCATGCCAAG
AGGTGGACCC GTGAAGAGTC GATCAATTAT TATGTTCAAA ATACCCCTAA CGCAAAGTCT
GATGCGATTA AGATGGTTGA ACGCCATGTA GTCATGCCAT CACAAGCCAC GGCCTATAAA
ATAGGCATGC TAAAAATACT CGAATTAAGG CAAAAAGCTA AGCTGGCCTT GGGCAACAAA
TTCGATATCA GAGAGTTCCA TACTCTGGTG TTACAAAATG GGCCTCTGCC ATTAGACGTA
CTCGAGGAGC AGGTAGATCT GTGGGTTTCT AGAGAAGGTT AA
 
Protein sequence
MPIRTKISIL ALALTTIIGG SAIATPSQPP LSPGEPLTQK AENESKKANA LFEIIFMENV 
MQSPISQTHL GIKNDYDKWD ERGEEADSNS LERTKRHLTQ LEQIDVSKLD EQTRLSFNLL
NQKLKQEVKD YQWRFHNYPV NQMHGGHTMV ASFLINQHQI DSQSDAEAYI ARLQGVPEYL
DQLERALEIR AEKGIIAPRF VFPHVLSGSK NIIEGAPFDS GEDSAIWADF KRKVEALEIE
SKDKKLLLSD ARQALLTRVK PAYEKLISYI VRLETKADSR DGVWKFPLGE QYYNNALART
TTTDMTAEQI HELGLKEVAR IHNEMREIMK KVNFEGDLPA FFKFMREDKQ FYYPATDEGR
DAYLHQAITL IDTISSRLDE VFNVKPQAPM IVKRVETFRE KSAGKAFYNQ PTPDGSRPGT
YYANLYDMEA MPKYQMEALA YHEGTPGHHM QIAIAQELEG VPKFRKFGGY TAYIEGWGLY
SEFFPKEMGL YSDPYSDFGR LAMELWRSCR LVVDTGMHAK RWTREESINY YVQNTPNAKS
DAIKMVERHV VMPSQATAYK IGMLKILELR QKAKLALGNK FDIREFHTLV LQNGPLPLDV
LEEQVDLWVS REG