| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0435 |
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| Symbol | |
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| ID | 5611191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 534359 |
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| End bp | 536614 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931280 |
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| Product | patatin |
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| Protein accession | YP_001472176 |
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| Protein GI | 157373576 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00139608 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000672418 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCCGCCC TGTATCAATT AATAATTAAG AACCAATATC CTATGATACG TAATCTAATA
TTTTTGCTGG TGGTCAGCTT TATCGCTGCT CCCGTCATGG CCGATGTCAG GCCAAAAGTT
GGTTTGGTAC TCAGTGGGGG AGGCGCGAAG GGGGCGGCTC ATATTGGTGT ATTGAAGGTG
CTCGAGGAGA ACAAGATTCC TGTCGACTAT ATCGCAGGAA CCAGCATCGG CGCATATGTC
GCAGGCATGT ATGCCCTTGG ATACAGTGCT ATTGAGATTG AAAAGATCAT GATGACAGAG
TCATGGTCAG ATGGATACTC AGATACGATT CCCAGAGAAT CATTGAGCTA TCGGAATAAG
CAGCAAAGAG ACAGATTTAA TATCCCGGTG AATATGGGAT ATAGCGATGA TGAGATGAAA
ATGCCCAACG GTCTCTTGCG TGGGCAAACC ATGTCTAAAC TTCTCCAGCG ATCCACGGGC
TTAGTTCATC AGTTTGGTCA CTTCAATGAG TTAGCTATTC CTTACCGCGC CGTGGCAACG
GATCTTGTAA CCAGTAAGGC CGTCGTTATC AATAATGGCA GTGTCGTCAA GGCCATGCAG
GCTTCGGCTA CCGTTCCCGG CGCGCTCCAG CCGGTTGAAT ATGAAGGTAA GCTTCTCGTC
GATGGCGGCA TCGCAAATAA TATGCCTATC GACGTGGTTA TGGGGATGGG AGCCGACATC
ATAATTGCCG TCGATATCGG TTCATCTCTG GTGAAGAAAG AGGAGTTAAA TAGTACTGTC
GCGGTATTGA ATCAGCTATC GACGATGTTG ACGAATGCCA GCTCTGAGAG ACAGAAATTG
CTTCTTGGTA AAGGTGACAT TCTCATTCGT CCAAAAGTCG GTGATATGAG TACCACAGAC
TTTTCAATCA TGCCTCAGGC TTATGCCTTG GGCGAATCGG CTGCGCTTGA GCATATTGAT
TTACTTAAGC AATTGAGTGT CACCGAGTCT CAATACGCCA GCTATCAGCA AGCTAAAAAG
CGCATAAGCA AAACCTGGCT CAATGAAGTC GACCACCCCT TAGTTGATAT TGTATTTAAT
AATGAATCGA GAGTAAGTGA TTCTCTGTTG AGGGAGGCCT TCGGAATTCA CCCTGGTGAG
GTCGTTACCA CAGAGCGACT CGAGCAAGGC ATTGCCAATG TATATGCCCT GGACAAGTTT
GAGCTGGTTA ATGCGGAATT TTCCGATACA GAACAGGGAC GTGTGCTGAC CTTAAATACC
AAGTCTAAAT CATGGGGGCC TAATTATTTT CAACTGGGCT TCAGCTGGGA AGATGACTTC
TCTCTGGACT CTGTCGTGTC CTTGGATCTG GCCTATACAC TCACCGATAT CACTGATACA
GGTGGTGAGT GGCGTAATGA ATTAAGGCTC GGTTTTGAGA AGTTAATCGC CACCGAGTTT
TATCTGCCTC TGGATTATGA TCAAGAGTTC TTTAGCCGGG CCAAATTAGC TTATGAGCAA
AAAGACTGGG ACTTCTATGA GCAAAACGCT AAAACACTGC AGTTATCTCA GACTCAATAC
AGGGCCGATA TTGGTATTGG CTATAACTTT GTAAAAGAGG GCATGGTTGA GCTGGGAATA
ACGGGTGAAA AGGGAGTTTT AGAAAATAAG GCTATAATTG ATGAGCTTAA ATATGAAACC
TATGGTGCTT ACTTTAAGTT TGGTTTCGAT GATCTCAACA GTATTAACTT CCCGACCTCC
GGTAATCGAT TTACCTTAAA CCTCTATTAC AGAAACGAGT CGGCGCCCGA TTTTTTAGGT
TTTGACACTA ACGAGAACTC CTTTCAGATC GAGGCGGATT GGCGCGGTGC ATTAAGTTTT
GGTAATCATG CTTTCGTAGG AATAGCGTCA TTGGCTACCG TCGATAAAGA TGACAGCTTC
AGCGTGCATG TGTCTGAGCT TGGTGGCTTC CTGAATCTAT CGGGTTATCA CAAAAATGCG
CTCGTTGGCG CTCATAAGGT GTTTGGTGCC TTCGTCTATC AGTACGATCT GGGACGAGAT
GTGTTAGGGA TGACAGATTA TCCCCTCTAC CTGGGTACGA GTATCGAGGC GGGTAACGTT
TGGGAGTACA GAGATGGGGT GGATCTCGAT GATCTTATCT ATTCCGGCAG TTTATATTTC
GGTACAGATA CCTCTATGGG CCCCGCCGCA TTAGGTTTTG GCTGGGCCGA TGATGGTGAG
ATGACAATAT TTATATTTAT TGGAAAGAAC TGGTAA
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| Protein sequence | MPALYQLIIK NQYPMIRNLI FLLVVSFIAA PVMADVRPKV GLVLSGGGAK GAAHIGVLKV
LEENKIPVDY IAGTSIGAYV AGMYALGYSA IEIEKIMMTE SWSDGYSDTI PRESLSYRNK
QQRDRFNIPV NMGYSDDEMK MPNGLLRGQT MSKLLQRSTG LVHQFGHFNE LAIPYRAVAT
DLVTSKAVVI NNGSVVKAMQ ASATVPGALQ PVEYEGKLLV DGGIANNMPI DVVMGMGADI
IIAVDIGSSL VKKEELNSTV AVLNQLSTML TNASSERQKL LLGKGDILIR PKVGDMSTTD
FSIMPQAYAL GESAALEHID LLKQLSVTES QYASYQQAKK RISKTWLNEV DHPLVDIVFN
NESRVSDSLL REAFGIHPGE VVTTERLEQG IANVYALDKF ELVNAEFSDT EQGRVLTLNT
KSKSWGPNYF QLGFSWEDDF SLDSVVSLDL AYTLTDITDT GGEWRNELRL GFEKLIATEF
YLPLDYDQEF FSRAKLAYEQ KDWDFYEQNA KTLQLSQTQY RADIGIGYNF VKEGMVELGI
TGEKGVLENK AIIDELKYET YGAYFKFGFD DLNSINFPTS GNRFTLNLYY RNESAPDFLG
FDTNENSFQI EADWRGALSF GNHAFVGIAS LATVDKDDSF SVHVSELGGF LNLSGYHKNA
LVGAHKVFGA FVYQYDLGRD VLGMTDYPLY LGTSIEAGNV WEYRDGVDLD DLIYSGSLYF
GTDTSMGPAA LGFGWADDGE MTIFIFIGKN W
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