| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0027 |
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| Symbol | |
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| ID | 5612761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 33511 |
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| End bp | 34038 |
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| Gene Length | 528 bp |
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| Protein Length | 175 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640930850 |
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| Product | protoporphyrinogen oxidase |
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| Protein accession | YP_001471768 |
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| Protein GI | 157373168 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
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| COG ID | [COG4635] Flavodoxin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00412155 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0535555 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTAATA CATTAATAAT CTATTCTACT GTAGATGGTC AGACGAAATC GATCTGCGAG
CTCGTTCAGG GGATAAATGA AGGTGCAGGT GATAGCGTAA CTCTGGCTTC CCTCGATGAA
GCTAAATTAT TAAATTTAGC TGATTTTGAC AAAATTTTGA TTGGTGCCAG TATTCGTTAT
GGAAAGCACA GGCCAGAACT TTACCAATAC ATTAATCACC ATCACGCCGT ACTCAGTGCT
AAACAGAATG CGTTTTTCAC CGTAAATGTC GTCGCCAGAA AACCTGAAAA AAACACGCCT
GAAACGAATC CCTATATGAA GAAGTTTTTG GAGCTGTCAC TCTGGAAGCC TCAACAGTTA
GCCGTGTTCG CAGGAAAGAT TGATTATCCC AGTTATCGCT TCTTTGATAA GACCATGATC
CGTCTCATCA TGTGGATAAC CAAGGGCCCA ACTGACACCA GCGGTACTTA TGAGTTTACT
GACTGGGAAC AGGTTGAAGA GTTCGCTAAA GCGTTTAGTG AGCAGTAG
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| Protein sequence | MSNTLIIYST VDGQTKSICE LVQGINEGAG DSVTLASLDE AKLLNLADFD KILIGASIRY
GKHRPELYQY INHHHAVLSA KQNAFFTVNV VARKPEKNTP ETNPYMKKFL ELSLWKPQQL
AVFAGKIDYP SYRFFDKTMI RLIMWITKGP TDTSGTYEFT DWEQVEEFAK AFSEQ
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