| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0026 |
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| Symbol | |
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| ID | 5612760 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 31956 |
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| End bp | 33413 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640930849 |
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| Product | TrkH family potassium uptake protein |
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| Protein accession | YP_001471767 |
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| Protein GI | 157373167 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
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| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0293301 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0416133 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATATA GAACAATAAT AAGAATAACA GGCCTCTTAA TGGGGTTGTT CTCTCTGTCA
TTACTTCCTC CGGCTTTGGT GGCAGTGATC TATAAAGATG GTGGCGGAAC GGCATTTATA
CAGGCTTTTG CACTCAGCCT TTTTCTTGGC TTTATTCTTT GGTATCCAAA CAGAAAGCAC
CACAAAGATC TGCGTACCCG TGAAGGCTTC CTGCTCGTGG TTCTTTTCTG GGGTGTGCTA
GGTTCTATCG GTGCCGTGCC CTTTATATTT ACCGCTCAAC CAGACCTGAG TATGACCGAC
AGCTTTTTCG AGTCATTCTC GGCGCTGACA ACTACAGGTG CTACTGTGAT TGTTGGTCTG
GATTCACTTC CTAAAGCAAT CCTGTTTTAT CGCCACCTGT TGCAATGGTT AGGCGGCATG
GGGATCATTG TGCTGGCTGT GGCAATATTA CCTGTATTGG GTATCGGGGG GATGCAGCTC
TATCGAGCAG AAATGCCTGG ACCCGTAAAA GACAGTAAGA TGACGCCCAG GATTGCAGAG
ACGGCTAAGG CGTTGTGGTA TATCTATTTT GCATTAACGA TTGCCTGTGC ATTTGCTTAT
TGGGTCGCAG GCATGGATCT ATTTGATGCT ATCTGCCACT CTTTCTCGAC GATTGCCATT
GGCGGTTTCT CCACCCATGA TGCCAGTATG GGCTACTTCG ACAGCACTGC AATTAACATG
GTGTGTGTGG TTTTTCTGCT TATCGCGGCG CTTAATTTTA GCCTGCACTT CGCCGCTTTT
ACACGTCGTG GAATCAACCT GAAAGTCTAT TTCAGAGATG CTGAGTTTAA GGCTTTAATC
ATAGTGCAGC TGGTTTTGAC CGGGATCTGT TTTGCGACTC TCTACCATTC GGGGATCTAT
GACTCACCCG AAGAGACATT AGACTTTGCC CTATTTCAGG CTGTTTCAAT ATCTACCACG
GCAGGCTTCG GTACTGAAAG CTTCCATGTG TGGCCACTAT TCCTGCCGAT GTTACTTATC
TTCTCAAGTT TCATTGGTGG CTGTGGTGGA TCGACCGCCG GTGGTATCAA GGTGATGCGG
ATGATCTTGC TGTTGAAGCA GGGCTCACGA GAATTGAAAC GTCTTGTACA TCCAAGAGGA
ATGTTCTCCA TCCGTATAGG AAACAAGGCC CTTCCTGAGC GTGTTATCGA TGCGGTATGG
GGGTTCTTCT CTGCCTATGC GCTGGTCTTC GTTATCTGTA TGTTGGCTTT GATGGCGATG
GGGATGGATA ATATCACCGC ATTTAGTGCT ACCGCGGCTT GCCTGAATAA CCTGGGGCCA
GGTCTGGGTG AAGTTGCCAG CAACTATGCC AGTATCAGTG ATGGCGCTAA GTGGGTTCTG
CTGATAGCTA TGCTGTTTGG ACGACTCGAA GTCTTTACCT TATTGGTACT GTTTACACCA
ACATTCTGGA GAACCTAA
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| Protein sequence | MQYRTIIRIT GLLMGLFSLS LLPPALVAVI YKDGGGTAFI QAFALSLFLG FILWYPNRKH
HKDLRTREGF LLVVLFWGVL GSIGAVPFIF TAQPDLSMTD SFFESFSALT TTGATVIVGL
DSLPKAILFY RHLLQWLGGM GIIVLAVAIL PVLGIGGMQL YRAEMPGPVK DSKMTPRIAE
TAKALWYIYF ALTIACAFAY WVAGMDLFDA ICHSFSTIAI GGFSTHDASM GYFDSTAINM
VCVVFLLIAA LNFSLHFAAF TRRGINLKVY FRDAEFKALI IVQLVLTGIC FATLYHSGIY
DSPEETLDFA LFQAVSISTT AGFGTESFHV WPLFLPMLLI FSSFIGGCGG STAGGIKVMR
MILLLKQGSR ELKRLVHPRG MFSIRIGNKA LPERVIDAVW GFFSAYALVF VICMLALMAM
GMDNITAFSA TAACLNNLGP GLGEVASNYA SISDGAKWVL LIAMLFGRLE VFTLLVLFTP
TFWRT
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