Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2929 |
Symbol | |
ID | 5078156 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 3396311 |
End bp | 3397207 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640500129 |
Product | 3'-5' exonuclease |
Protein accession | YP_001184443 |
Protein GI | 146294019 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00209751 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTAA TGAAGTATTG CCTTTCGCCC AATAAGTTAG CTTGGCTACG TCAGGAGCTA GGCGAGAATG CCGATGGTTT GATTGCAGTA ATGGATGCGG CGGGTAGCGC CTATTTGGCC CAAGCTGCAC AGTCTGATGC TTCAGTTGCA ATAGATGCTT TGCCTAAATT AATAGGGCCT GAACTTAAGT TATTGTGGTT TAAACAAAAG CTTGCGCTTA TCACTCGTCT TGATGATATT GAGTTATCCA AATTAGCCCC TTTCGAGCTT GAGGGCGCGC GAGTGGTTGT GGTTCAGCCT AATGAATTAA CAACAGTGCT GCAAAGCTTA AGCAAGCAGC GCGTCATTGG GTTTGATACC GAAACTCGGG CAAGTTTTGA GCGCGGAGTG CAGCATCCCT TAAGTTTGAT CCAAATTGCG ACCCATGACA CCTGCTATTT GTTTCAACAT GCGCTGTTAG CTGAGCGGTT AGGGTTATTA AAACCTGTGC TTGAGGATGA GAATATTTTG AAAGTGGGTG TTGGCCTTAG AAGTGACGGT CAAGCATTAA CGCGGGAGTG GGGGATTAAT GTCACGCCGA GGTTAGATTT GAACTGGGTT CTTGCACAGC TTGGGGCGGG TAAAGAAATG GGTACTCGTC AACTGGTCGC CACGTTACTG CAAAAGCGTA TCGATAAGCC TAAAAAAGTG ACCCTATCGA ATTGGCAACA GGTACCTCTA ACCTCTACAC AAATTGTTTA TGCCGCCTTA GATGCATTGG CAGCGCAGCA TTGTTTTAGC GAGTTAATCG ACAAACTTAA GCCATTTTAT CTGGCATCAT TAGAAGCGAA TACTCAGTTG CTTACTCAAA ACCTCACGGT TCGACTGGCG AGCTATTTTG AACAGGCTAA TGGGTAA
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Protein sequence | MKLMKYCLSP NKLAWLRQEL GENADGLIAV MDAAGSAYLA QAAQSDASVA IDALPKLIGP ELKLLWFKQK LALITRLDDI ELSKLAPFEL EGARVVVVQP NELTTVLQSL SKQRVIGFDT ETRASFERGV QHPLSLIQIA THDTCYLFQH ALLAERLGLL KPVLEDENIL KVGVGLRSDG QALTREWGIN VTPRLDLNWV LAQLGAGKEM GTRQLVATLL QKRIDKPKKV TLSNWQQVPL TSTQIVYAAL DALAAQHCFS ELIDKLKPFY LASLEANTQL LTQNLTVRLA SYFEQANG
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