| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2670 |
|---|
| Symbol | |
|---|
| ID | 5079981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3099204 |
|---|
| End bp | 3100652 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640499852 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001184188 |
|---|
| Protein GI | 146293764 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00030492 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTAAAAA AGCTTCATGT AGCACTCATT GGATTTGGAT TGACGCTAGT GACGCCGTTG
AAGGCTGAAT TTTCATTAGC TCAAATTCCA CCACTGACAA ATAAAACGCC TATCACTCTC
GTGGCTGAAA AAGGATTTTG GACGGACTAT CTCACCCAAG AAATGCTACC TAGATTTACA
GCAAAAACGG GCGTCAGTGT CAAAGTGGTC AGCACTGAAC TTGAGTTAAT GTTTAACCTT
CAAACTCAGG CATTAAAACA AGGCGAAGGA ACATATCATT TGCTTACCAT GGAGGCGGGA
TGGGCAAAAG AATGGGCATC GAATGGTTAT ACGGTTCCCC TCTTAGAATT AGCAAAACTT
TACGATCCCG ACGGTGAAAA AGCGATGGAG TGGTACCTTG AGCCTTATTA CCCCTCCCTG
CTCAATATTT TATCTTATTC AGGCGAAATC CATGCCATTC CCTATAATAA CTATGTAATG
GGGAGTCATT ACCGTGAAGA TCTTTTTAAT CATCCCACTG AGCAGGCTCG CTTTTTAGAA
CGTTTCGGTT ATCCATTAAC GCCCGCCAAA ACACCTGAAG AACTTCTCGA CCAAGCCATG
TTCTTTACCC GCAAAGCAGG TTCTGAACTT GGGGGAAAAA CCTTATCGCA CGATTTTTAC
GGTCTTGCAT TAATGTCAGG TAATAAACCC CATATCAATG ATGAGTTTTC GAGCATACTC
TGGAGCCAAG GAGGAGCTTG GATGTGGCCT CGATTTAATA ACCAACAAAA AATTACTCAT
TTTGAAGTAC CAATGATTAA TCATGAGGCC ATAAGAACTG CCGAGATTTA CCGCAAATTG
ATGGCATATT CAGTGCCTGC AAATGAACAA TTTGCCTTTA ATGAGGCCGC AAATGCCATT
GCTACAGGAC AAGCCGCTAT CTGGCCCTTT GCTTACAATA ACCTATGGCC AATCTCTTTT
CGTGTTGAGA AAAATATCCC TGGCGCACGC CTTGCGGTCG CTCAGGTTCC TGGAGGACAC
CCCTATAACG GAGCCTATGC CTTTGCAGTC AGCTATGACA GCAAGAACCC ACAAGCAGCC
TATTGGCTCC TTAAATATAT GGGAACCTAT GAAGCACAGT ATGCCTATGC CCTTGGGGGA
GGTAACCCCT GTCGTATGGA TGTTCTCACT GCCCCTGAAT TTAATAAAGA AGCATTAAGA
GAAATCGCAG GGGCATTCAA CGCCAGCCAT ATAGCAAATT TATTTTGGTC AACGAAGGTA
TTAACTTTTG GCCACTTTAC GACCACAGCA ATGGGGCAAA TCTACCCTGA ACTGACTCAA
GCATGTTATG CCGCGAGCCA TAAAACGACA GATAGTACTG ATATTTTCAG CAAATTAAGT
ACTAAGATAA AAAATCTCCA AAATACCTAT GGGGAAGTGC CTGCGATTGA CAAGAAAGAT
GAAAAATGA
|
|---|
| Protein sequence | MLKKLHVALI GFGLTLVTPL KAEFSLAQIP PLTNKTPITL VAEKGFWTDY LTQEMLPRFT
AKTGVSVKVV STELELMFNL QTQALKQGEG TYHLLTMEAG WAKEWASNGY TVPLLELAKL
YDPDGEKAME WYLEPYYPSL LNILSYSGEI HAIPYNNYVM GSHYREDLFN HPTEQARFLE
RFGYPLTPAK TPEELLDQAM FFTRKAGSEL GGKTLSHDFY GLALMSGNKP HINDEFSSIL
WSQGGAWMWP RFNNQQKITH FEVPMINHEA IRTAEIYRKL MAYSVPANEQ FAFNEAANAI
ATGQAAIWPF AYNNLWPISF RVEKNIPGAR LAVAQVPGGH PYNGAYAFAV SYDSKNPQAA
YWLLKYMGTY EAQYAYALGG GNPCRMDVLT APEFNKEALR EIAGAFNASH IANLFWSTKV
LTFGHFTTTA MGQIYPELTQ ACYAASHKTT DSTDIFSKLS TKIKNLQNTY GEVPAIDKKD
EK
|
|---|
| |