Gene Sputcn32_2482 details

Gene Information

• Locus tag: Sputcn32_2482
• Symbol: secD
• ID: 5080899
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: -
• Start bp: 2881108
• End bp: 2882958
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640499650
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001184002
• Protein GI: 146293578
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000187651
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGA TGCTTATCAT CGCCATAGGT 
TGTTTCTATG CCGTACCGAA CCTTTTTGGT GAAGATCACG CGGTGCAAGT GGTGGCGACT 
CGTGGTGCAG AAGTAACTGC ATCTACCCAA GCCAGAGTGA ACGAGCTGTT AGCCGGTAAG 
GGCATTGCGG TAAAGCGCTC TGAGCTTGAA AAAGGCCAGT TGTTGGTTCG TGTGCAGAAC 
GCGGATCAAC AATTATTAGC AAAAGAAACG ATCGCAGAAG ATTTAGGTGA TAAGTTTAGT 
GTTGCACTTA ACTTAGCTCC AGCAACACCG CAATGGCTCG AGTCTATGGG TGGTAGCCCT 
ATGAAACTCG GTCTCGATCT TCGCGGCGGT GTGCACTTCT TAATGGAAGT GGACATGGGC 
GAAGCGATCC GCAAGATGGA AGAGGCTAAG GTTGCTGACT TTCGTGCACA ATTACGTGAA 
GAAACAATCC GTTATGCGGG CATTCGTGTT AATGCCTCTG GGATTGAGAT TAAATTCCGT 
GATGCTGAAA GTTTAGCCAG TGCAGAACGT TTCCTTAAAT CTCGCAGTAA CGATATGGTC 
TTCACCGATG TGAGCAAGGG TGATGATTTT GCCCTGCAAG CGGTGATGAG TGAAGCTTAT 
CTTAAGCAGG TTAAAGAAGA AGCACTGCAA CAAAACATTA CCACTATTCG TAACCGTGTT 
AATGAGTTAG GTGTTGCTGA ACCTGTAGTA CAGCGCCAAG GTGCAGAGCG TATTATCGTT 
GAACTACCTG GTGTACAAGA TACGGCTCGC GCTAAAGAAA TTTTAGGGGC AACCGCATCG 
ATTGAATTCC ATATGGTGGA TGACAAAGCC GATCCTAATG CCGCGCAATC AGGACGTATC 
TCTGCAGGCT CTGAAGTGTA TCAACGTCGT GAAGGCGGCC AAGTCGTATT GAAAAAAGAA 
GTGATGCTAA CGGGAGATCA TATCACCGGC GCCCAACCTA GCTTTGATCA ATACAGTCGC 
CCACAGGTGA GCATTAATCT TGACGCTAAA GGCGGTACCA TTTTCTCTAA TGTGACGAAG 
GACAACATAG GTAAACCTAT GGCGACCTTA TTCATTGAAT ATAAAGACAG TGGTGAACGT 
AACGCCGATG GCAGCGTGAA AATGCAGAAA ATCCAAGAAG TGATTTCTGT GGCAACCATT 
CAAGCCCGTT TAGGTCGTAA CTTTGTGATC ACAGGTTTAA GCCACGGTGA AGCACAAAAC 
CTTGCTTTGC TGTTACGCGC TGGAGCTTTG ATTGCACCTG TATCCATTGT TGAAGAACGT 
ACCATTGGTC CAAGTTTAGG CGCTGAAAAT ATTGAGAATG GTGTTCAAGC TATGGTGTGG 
GGTATGGCCG TCGTCTTAAT CTTCATGCTG GTGTACTACC GCGGTTTTGG GCTTATCGCT 
AACCTCGCGT TAACTGCAAA CTTAGTCATG GTTGTAGGCG TGATGTCGAT GATCCCAGGC 
GCAGTATTGA CCCTTCCCGG TATTGCGGGG ATGGTGTTGA CAGTGGGGAT GGCAGTTGAT 
GGTAACGTAC TCATTTATGA GCGTATTCGT GAAGAACTTC GTGCAGGACG TAGTGTACAG 
CAGGCCATCC ATGAAGGTTA TGGTAATGCG TTTTCAACCA TTGCCGATGC GAACATCACG 
ACTTTCCTTA CCGCATTAAT TTTATTTGCT GTGGGGACTG GTGCTGTTAA AGGCTTCGCG 
GTGACCTTGA TGATAGGTAT TGCGACTTCC ATGTTTACCT CTATCGTGGG TACTCGCTCC 
ATCGTTAATG CGATTTGGGG TGGTAAGCGC GTGAAGACAC TGTCTATCTA A 

 

Protein sequence

MLNKYPMWKN IMVMLIIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ARVNELLAGK 
GIAVKRSELE KGQLLVRVQN ADQQLLAKET IAEDLGDKFS VALNLAPATP QWLESMGGSP 
MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRAQLRE ETIRYAGIRV NASGIEIKFR 
DAESLASAER FLKSRSNDMV FTDVSKGDDF ALQAVMSEAY LKQVKEEALQ QNITTIRNRV 
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRI 
SAGSEVYQRR EGGQVVLKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSNVTK 
DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN 
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IENGVQAMVW GMAVVLIFML VYYRGFGLIA 
NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ 
QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAVKGFA VTLMIGIATS MFTSIVGTRS 
IVNAIWGGKR VKTLSI