Gene Sputcn32_1939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1939 
SymbolruvB 
ID5078387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp2223005 
End bp2224009 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content44% 
IMG OID640499100 
ProductHolliday junction DNA helicase RuvB 
Protein accessionYP_001183461 
Protein GI146293037 
COG category[L] Replication, recombination and repair 
COG ID[COG2255] Holliday junction resolvasome, helicase subunit 
TIGRFAM ID[TIGR00635] Holliday junction DNA helicase, RuvB subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00566974 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGAAG CAGATAGACT CATCCAGCCG CAACTTCAAG GACAAGATGA TGTTGTGGAT 
AGGGCAATGC GGCCTAAATT ACTTGATGAA TATACAGGGC AAGATGACAC TCGCGCTCAG
CTTAAGGTTT TTATTCAAGC AGCCAAAAAT CGTAATGAAG CCTTAGATCA TATGTTGATT
TATGGTCCTC CAGGGCTAGG TAAAACGACA TTAGCGATGA TTGTTGCGAA TGAAATGGGC
GTTAATATCA AATCCACCTC AGGTCCTGTG CTTGAAAAAG CAGGGGATTT GGCCGCATTA
CTCACGAATT TAGAATCCGG TGATGTGCTA TTTATCGATG AAATTCATCG TTTAAGCCCA
GTAGTGGAAG AGATATTGTA TCCAGCAATG GAAGATTATC AACTCGACAT CATGATAGGT
GAGGGGCCTG CAGCGCGTTC CATCAAGCTT GATTTACCGC CATTTACTTT AGTAGGTGCA
ACCACTCGAG CAGGGGCATT AACATCTCCT TTGCGTGCTC GCTTTGGTAT TCCACTTCGA
CTTGAATTTT ATAACATTAA AGATTTAAGC ACGATTGTAA CGCGCTCTGC ACAAGTGATG
GGATTAGAGA TTGATACAGA AGGTGCGTTT GAGATTGCAC GACGTTCTCG TGGTACACCA
AGGATAGCTA ATCGCTTACT TCGCCGTGTG CGCGACTATG CCGAGGTTAA ACATGATGGT
GCGATCACTC AATTTGTTGC CGATCATGCG CTGGATCTAC TCGATGTCGA TAATGAAGGG
TTCGACTATA TGGATCGAAA GTTGATGTTA GCCATTATCG ATAAGTTTAT GGGTGGGCCT
GTTGGCTTAG ATAACTTAGC CGCTGCAATA GGTGAAGAAC GCGAAACTAT CGAAGATGTG
CTAGAGCCTT TTTTGATCCA ACAAGGGTTT ATCCAAAGAA CTCCCAGAGG ACGCATTGCT
ACGGCACGTG CGTATCAGCA TTTTCAGTTG ATCAAACCTG AGTAA
 
Protein sequence
MIEADRLIQP QLQGQDDVVD RAMRPKLLDE YTGQDDTRAQ LKVFIQAAKN RNEALDHMLI 
YGPPGLGKTT LAMIVANEMG VNIKSTSGPV LEKAGDLAAL LTNLESGDVL FIDEIHRLSP
VVEEILYPAM EDYQLDIMIG EGPAARSIKL DLPPFTLVGA TTRAGALTSP LRARFGIPLR
LEFYNIKDLS TIVTRSAQVM GLEIDTEGAF EIARRSRGTP RIANRLLRRV RDYAEVKHDG
AITQFVADHA LDLLDVDNEG FDYMDRKLML AIIDKFMGGP VGLDNLAAAI GEERETIEDV
LEPFLIQQGF IQRTPRGRIA TARAYQHFQL IKPE