Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1660 |
Symbol | |
ID | 5079408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 1891411 |
End bp | 1893600 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640498809 |
Product | TonB-dependent receptor |
Protein accession | YP_001183184 |
Protein GI | 146292760 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000750921 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAACA GTAAAAATCA CATTTCTAGC ACATCCTTGA AGCGAGCACC GTTGGCATTA GCCATTGCCG CCGCGCTCAG CACCTCTGCA TTTGCACAAA CCGATGCTAT CGATAAACCC GATCCGAACA CTGAGATGGA AATCATGGTG GTGACGGCGG ATTTTCGCAG TGCCAGTTTA GAAAAAATGC CTTCAAGCAT AACCGTTATC GATGCCCAGC AAATTCAAGA TGAAAGCGCA CAGCACTTTG AAGATGTGCT TAATTCCATC GCTAACGTTA ATTGGTCAGG TGGCAGCTCG CGGCCGAAAT ATTTTCAGAT CCGCGGCGTG GGTGAGCAAG AGCAATATCA AGGCGCACCT AACTCATCGG TAGGCTATAT TGTTGATGAT ATTGACTTAT CTGGTATCGG CATGGTGTCG AGTATGTATG ATCTACAACA AGTCGAAGTG CTGCGTGGGC CACAGGGGAC ACGCTACGGC GCCAATGCCT TAGCGGGATT AATTTACTTA AAAAGTAATG ATCCAACCGA TGTGTTTGAG CATGGTGCAG AGGTGTCTTT AGGCAATGAC GATCTGCAAA CCTTTAGCGG TTTTAGCTCT GGACCATTAA CGGATTCTGG TAAGTTGCTG TACCGTGTGG CGCTACAGCA ACATCAGCAA AACGGTTATC GCGATAATCT GTATTTAGGA CGTGATGACA CCAATGGCCG TGATGAATTT ACGGGTCGCG CTAAATTACG CTGGTATGCA ACCGATGATT TGCAACTGGA TTTAACCCTG CTACATGCCA ATTTTGATAA TGGTTATGAT GTGTGGAGTT TAACCAATTC ACCAACACAG ACGACCTCGG ATCAGCCTGG CGTTGATAGC CAGCGCACCA CTGGTGTGGG TTTTAAAGCG ACTTACTCAG GTGCAGAGCA GTTTGAGCTG ACATCACTTA CCTCATTTGC CAATACCGAT CATCATTATA GTTACGATGG CGATTGGGCC AATTCTGAGT ATTGGGCATC TAAACAATGT GAAGAGGGCG GTAATGTATC CCCTTGTCAG TACGATTACT TTTGGGACAA AACGGGTCAG CGTAAAACTT TATCCCAAGA GTTTCGTTTA AGCTCGACGG ATCAAGGCCG TATTTTTGCA GGCTCAACCG ATTGGTTAAT TGGGGTCTAT GGGATGAACC TCAAAGAAGA TAACCAATTG GATTCTGAAT ATAATTCTTG GCCGGATGAG GTATTAGACT CAGAGTACGA AGCGACGAAC TATGCGCTGT TTGGTCAGAT CGATACGGAT CTGGGCTCTG ATTATACCTT ATCTGTGGGG CTACGTTTGG AGCGGCGTAA TAGCCATTAC TCGGATACTA ATAACGACAA TTTCGATCCG AGTGAAACCA TGTGGGGCGG CCATATTGCA CTCAGTAAAG TGCTGAGTGA GTCTCATAAT GTTTACGCCC GTGTGGCGCG GGGTTACAAG GCGGGCGGGT TTAATATGAC CTTACCAGTC GAACTCAATG ATAAAAAAGA GTTTGATCCC GAAACCTTAT ACAACTACGA AATCGGTTTA AAATCCCATT GGTTTGAAGG GATTATCGAC ACCAATTTTG CGCTGTTCTA TATGGATAGA CAGGATCAGC AAGTGGCAGC TTCGCAGCAA GATCCCAACA AGCCACAACG GTTTATCCTC TACACTGAAA ATGCGGGTAG CTCAAACAAC TACGGTGCCG AGCTGGACGT GACTTGGTAC GCCACCGATA ATCTCCAGTT TTATTCAAGC CTTGGTTGGT TAGAGACCGC TTACGGTAAT TACCAATATC AAGATAAGTA CGGTACTGAT GTGGATTTAA CTGACCGCGA TCTAGCCCAT TCCCCCCACT TTACCTACAG CCTTGGCGGG ACTTATCGTG CTAACTCAGG TTGGTTTGCC AACTTGAATA TGAGTGGCAA GAGCGAGTTT TATTACTCAG ACAGTAATGA CTCCCGCTCT GAACCATATA CTGTTGTGAA TGCGCGGCTT GGTTATGAGG CGAGTGCTTG GTCGGCTTAT TTATGGGGCC GTAATTTATT TGATGAAGAA TATGGCGTTC GTGGTTTCTA TTTTGGTAAC GAGCCCGATA ATGGCTGGGC AGAAAAACAA TATATTCGCT ATGGCGATCC GCGCCAGATT GGTGTGACCT TTAACGTCAA GTTTATGTAG
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Protein sequence | MFNSKNHISS TSLKRAPLAL AIAAALSTSA FAQTDAIDKP DPNTEMEIMV VTADFRSASL EKMPSSITVI DAQQIQDESA QHFEDVLNSI ANVNWSGGSS RPKYFQIRGV GEQEQYQGAP NSSVGYIVDD IDLSGIGMVS SMYDLQQVEV LRGPQGTRYG ANALAGLIYL KSNDPTDVFE HGAEVSLGND DLQTFSGFSS GPLTDSGKLL YRVALQQHQQ NGYRDNLYLG RDDTNGRDEF TGRAKLRWYA TDDLQLDLTL LHANFDNGYD VWSLTNSPTQ TTSDQPGVDS QRTTGVGFKA TYSGAEQFEL TSLTSFANTD HHYSYDGDWA NSEYWASKQC EEGGNVSPCQ YDYFWDKTGQ RKTLSQEFRL SSTDQGRIFA GSTDWLIGVY GMNLKEDNQL DSEYNSWPDE VLDSEYEATN YALFGQIDTD LGSDYTLSVG LRLERRNSHY SDTNNDNFDP SETMWGGHIA LSKVLSESHN VYARVARGYK AGGFNMTLPV ELNDKKEFDP ETLYNYEIGL KSHWFEGIID TNFALFYMDR QDQQVAASQQ DPNKPQRFIL YTENAGSSNN YGAELDVTWY ATDNLQFYSS LGWLETAYGN YQYQDKYGTD VDLTDRDLAH SPHFTYSLGG TYRANSGWFA NLNMSGKSEF YYSDSNDSRS EPYTVVNARL GYEASAWSAY LWGRNLFDEE YGVRGFYFGN EPDNGWAEKQ YIRYGDPRQI GVTFNVKFM
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