| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0768 |
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| Symbol | tolC |
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| ID | 5081977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 854186 |
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| End bp | 855493 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640497893 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_001182297 |
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| Protein GI | 146291873 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000309945 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTA AGATCCGTTC TTTATGCGCA GCATTAACTC TCGCAGCTTC CGCTCAAGCG
GTACAAGCAG ATGATTTACT GCAAATTTAT CAACAAGCAC TGACTAACGA CCCTCTCGTG
TTACAAGCTC AGGCGCAACG TGATGCTTTA TTTGAAAAGA TTGAGCAAAA CCGTGCGCCT
CTGTTACCAA CACTGAGTGC AAACGTAGGG TATGACAAAG CCTGGAATGA CCCTAGGGAT
AATACCAGTG GTTTAACGGG TGGTCTTAAG TTAAATCAGG TCATTTATGA CCACAGTGCT
TGGGTAGGTT TAAGCCTTGC AGAGAAAGCC GCTTCTCAAG CTGATTCAAA CTATGCATCA
ACGCTACAAA CCTTGATTAC TCGCGTGACT AAAGCCTACT TCGATGTGTT AACGGCCAAA
GATAACTACG AGTTCCAAGG TGCAGAAAAA CGCGCTATTG AACGTCAACT TGAGCAAACA
AAACAACGCT TTGCTGTAGG TCTAACAGCA ATAACAGATG TACATGAAGC TCAAGCTCAA
TATGACCTAG CGTCTGCCAG CGAGATCCTT GCTGAAAACG ATCTTGCCAA TAGCTACGAA
GCACTGCGTG AAATCACAGG TATCGATCAC AAGACTCTTA ATGTGCTAGA TACAAATCGT
TTCTCAGCCG TGACTCCAGC CCCTTCATCA CCAAGTGAAT GGCTAAAGAT CGCTGAATCA
AACAGTGTTG ATCTAATGAC CCAACGCATT GGTAAAGATA TTGCTCAGGA AACCATCAGC
CTTTACAAAG CGGGCCATAT GCCATCCTTG AGCTTAAGTG CTGGTTATAA TAAAGGGCTT
GAGCAAAAAA CAGGCAGTGT TAACGATCCT GATTTTGATA ATGTCAATGT GGGCTTAAAT
TTAAGCATTC CCATTTTTGA AGGCTTTAAA GTGACCTCTC AAGTCAATGA AGCACAATAT
CAATATGTTG AAGCCAGTGA GAAACTTGAG CAAACCTACC GTAGTGTTGT CAAGAATGTA
CGCAATAACT ACAACAACGT AGGCGCCTCA ATTAGCTCAA TTCGTGCCTA TGAGCAATCG
GTCATTTCAT CAGAAAGCGC ATTAAAAGCG ACTCAGGCGG GCTTTGAAGT CGGTACTCGT
ACTATCGTTG ACGTACTAAA CCGTACCCGT GACTTGTATG ACTCAAAACG TAAATTGTCA
GATGCACGTT ACAGCTACAT TAATTCGATC GTTGCCCTAA AGAAAGCAGC AGGCACACTT
AACGAAGATG ATGTTATTGC CATCAATAGC GGCCTAAAAG CTGAGTAA
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| Protein sequence | MKFKIRSLCA ALTLAASAQA VQADDLLQIY QQALTNDPLV LQAQAQRDAL FEKIEQNRAP
LLPTLSANVG YDKAWNDPRD NTSGLTGGLK LNQVIYDHSA WVGLSLAEKA ASQADSNYAS
TLQTLITRVT KAYFDVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASASEIL AENDLANSYE ALREITGIDH KTLNVLDTNR FSAVTPAPSS PSEWLKIAES
NSVDLMTQRI GKDIAQETIS LYKAGHMPSL SLSAGYNKGL EQKTGSVNDP DFDNVNVGLN
LSIPIFEGFK VTSQVNEAQY QYVEASEKLE QTYRSVVKNV RNNYNNVGAS ISSIRAYEQS
VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSI VALKKAAGTL
NEDDVIAINS GLKAE
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