Gene Smed_5082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5082 
Symbol 
ID5319384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp29925 
End bp30677 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content63% 
IMG OID640776862 
ProductGntR domain-containing protein 
Protein accessionYP_001313794 
Protein GI150377199 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.992616 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGGCA CGAGAAAAGG GGGCGGTCGC CGGTCGCTGT CCTCGCAGGT GGCAGACGCC 
ATAAGGACGC AGATCGAGGC GGGATATTAT GCGCCGGGCG ACAAGTTGCC GACCGAGCCG
GCCTTGATCG ACAAGTTCGG ATTCAGCCGA ACCGTCGTGC GTGAGGCGAT CGCTGCACTT
CGGGCCGATG GCCTGGTGGA GTCGCGGCAA GGCTCCGGGG TCTTTGTAAT AGGGCCGCGA
CAGAGCGATC CGGGCATGAA GCTCTTTACC GGCGAGACGG ACAAGATTTC GGATATCATC
GAGGAGCTGG AACTGCGCAT AGGCATCGAA GTCGAAGCGG CAGGGCTTGC CGCAGCGCGA
AGTTCACCAG CGCAGGAAGC CGAGATTCAG GCCCAGGTAG AGCGGTTCGC CCATCTCGTC
GCCGAAGGCA GGCCGACGGA CGAAGCGGAT TTCCAGTTCC ACATGGCGAT AGCGACGGCC
ACGAACAATG CCCGGTTCCG CACTTTTCTG GAGCATGTCG GGCGGCGCAT GATTCCTCGC
GTGAAGTTTC GGACGGTCAT GGGTGGCGTC GATCCGTTGC CGAATCGGGA CGAGCCCATT
CTTCGGGAGC ATCGCGAAAT CGCCGAGGCG ATCCTGTCGC GGGATCCGGA CCGGGCGCGG
GAGGCAATGC GCCGGCATCT GGTCACCGGG ATCAAACGCT ACCGATCGCT GACAACCTGG
CGTCAAACCG AAAAAGCCGA CGAGGTCGGT TGA
 
Protein sequence
MPGTRKGGGR RSLSSQVADA IRTQIEAGYY APGDKLPTEP ALIDKFGFSR TVVREAIAAL 
RADGLVESRQ GSGVFVIGPR QSDPGMKLFT GETDKISDII EELELRIGIE VEAAGLAAAR
SSPAQEAEIQ AQVERFAHLV AEGRPTDEAD FQFHMAIATA TNNARFRTFL EHVGRRMIPR
VKFRTVMGGV DPLPNRDEPI LREHREIAEA ILSRDPDRAR EAMRRHLVTG IKRYRSLTTW
RQTEKADEVG