| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1213 |
|---|
| Symbol | |
|---|
| ID | 5322060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1296732 |
|---|
| End bp | 1297913 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640790154 |
|---|
| Product | aminotransferase class V |
|---|
| Protein accession | YP_001326898 |
|---|
| Protein GI | 150396431 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.145189 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.43356 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTATAG ACCTCGAAAA GGTTAGATCA GAGACACCGG GTATCCGGAA CCGAATCCAC
CTGAACAACG CTGGGGCAGC TCTGATGCCG AATCCGGTGC TCGAAGCCAT GGTTGGCTAT
CTCAACCGGG AAGCGGAGGT TGGTGGGTAC GAGGCGGCCG GTGAAGCTGC TAGTGAGCTT
GATGGCGTCT ACGATAGCGT GGCGCGCCTG CTTGGTTGCG GTCGGGATGA GATCGCCCTG
ACCGAAAATG CGACCGTCGC CTGGCAGCTC GCCTTCTATG CCCTCACGTT TCGGCCCGGA
GACCGCATAC TCACGGCGCG GGCCGAATAT GCAGCAAACT ACGTCGCCTT TCTGCAGATC
GCGAAGCGCA CCGGGGCGTC GATAGAAGTC ATTCCGAGCG ATGACGGCGG CGTCCTTGAC
CCGGCATGCC TTGAACAGAT GCTCGACGAA CGCGTGAAGC TCATCGCCAT TACCTGGGTG
CCAACGAACG GAGGGCTGCG CAATCCCGCG GCTGCCGTGG GTGCGATTGC ACGTCGCCAC
GGTATAACTT ATCTGCTCGA CGCGTGCCAA GCTGTCGGAC AGATGCCGAC ACGCGTCGAA
GAGCTTGGCT GCGATATATT GACGGGAACA GGTCGCAAAT TTCTTCGCGG CCCACGCGGA
ACCGGATTTC TCTATATCCG CAGAGAGCTC TTACTGACCC TGGAACCACC AATGATCGAT
CACTTCGCGG CCCCGTGGGT CGCTCCAGAT CGCTATGAGC TACGGCGTGA CGCGCGGCGG
TTCGAGACGT GGGAGAACAA CTACGCCGCT CGTCTGGGTC TCGGCCGCGC TTTGGATTAC
GCGCTGGATC TGGGACTGCA CGAAATTGAG AATCGATGCG GCAACTTATC GGAGAGATTG
CGCAATGGAC TTCGGAACAT CGAGGGGGTC GCCGTCCATG ATCTCGGGCC GAAGCCAGCG
TCAATTGTGA CGTTTTCCGC TCGCGATTAT ACCGCAGCGA ATTTCAAGGC GTTGGCGTCG
CGGTACGGCT TCAATGTAAG CGCCTCCGCC CCTTCGAGTA CATTGCTCGA CGCAGCAGCA
AGAGGTCTGC CCACTGTGGT TCGAGCCTCA CCGCACTACT ACAATACGGA AGATGAAATC
GATAGTTTCA CCCGTTTCGT ACGGGATAGT CGACGCAAAT AG
|
|---|
| Protein sequence | MPIDLEKVRS ETPGIRNRIH LNNAGAALMP NPVLEAMVGY LNREAEVGGY EAAGEAASEL
DGVYDSVARL LGCGRDEIAL TENATVAWQL AFYALTFRPG DRILTARAEY AANYVAFLQI
AKRTGASIEV IPSDDGGVLD PACLEQMLDE RVKLIAITWV PTNGGLRNPA AAVGAIARRH
GITYLLDACQ AVGQMPTRVE ELGCDILTGT GRKFLRGPRG TGFLYIRREL LLTLEPPMID
HFAAPWVAPD RYELRRDARR FETWENNYAA RLGLGRALDY ALDLGLHEIE NRCGNLSERL
RNGLRNIEGV AVHDLGPKPA SIVTFSARDY TAANFKALAS RYGFNVSASA PSSTLLDAAA
RGLPTVVRAS PHYYNTEDEI DSFTRFVRDS RRK
|
|---|
| |