Gene Smed_1019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1019 
Symbol 
ID5321864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1089359 
End bp1090351 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content62% 
IMG OID640789961 
ProductRluA family pseudouridine synthase 
Protein accessionYP_001326707 
Protein GI150396240 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.798058 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGGCA TAGAACACAG GCAGGTGGAT AGCGACGAGG CGGGCATGCG CCTCGACCGC 
TGGTTCAAGG TGCATTTTCC CGGATTGGGC TTCGGTCCGC TGCAGAAGCT GCTGCGCTCC
GGACAGATCC GCGTGGATGG TGCGCGAGCA AAGTCCGATA CGCGCATACA ACCCGGTCAG
ACCATCCGCA TTCCGCCGCT TGGCGTCGAT CCCAAGGAAA AGAAAACCGG ACCGATCGGA
GGCCGCGACC TGCGTCAATC ACCGGACGGT GAGCTTCTGT CGCGCATGGT GCTTCACGAG
GATGCCAAGG TCATCGTGCT CAACAAGCCG CCGGGCCTTG CAGTACAGGG CGGTTCGGGC
GTCAATCGGC ACATAGACAA GATGCTGGAG GCCTGGACGA GCCAGAAGGG CGAAAAGCCG
CGCCTGGTCC ATCGTCTCGA TCGCGACACG TCGGGCGTAC TCGTCATTGC CCGGACGCGC
GGTGCCGCGC AACAACTGAC CGCTGCCTTT CGCGAACGCG ATACGAAAAA GACCTATTGG
GCGTTGGTCA GGGGCGTGCC GCGCAAGCGC GAAGACAAGA TTTCCACCTG GGTGGTCAAG
GAACAGACGC CGGACGGCGA CCGAGTGCGG ATCGCCAAGC ATGGCGAGGA TGGCGCCGAC
CATGCCATCT CCTTTTACCG GATCGTCGAG CAGGCCGGTC AGAACCTGGC CTGGCTTGAA
ATGGAACCCT ATACCGGACG CACGCATCAG TTGCGCGTCC ACGCCGCGCA TATCGGCCAC
CCCATTATCG GCGATCCGAA ATATTTCGAA GCCGACGTCA ATTGGACCTT CCCCGGTGGT
ATGCAGAACC GCCTGCACCT TCACGCACGG CATATAGACA TTCCGCATCC GAACGGAGGA
AGGCTGAAGG TGACGGCTCC CCTGCCCCAG CACATGATGC AGAGCTGGAA CCTGCTCGGC
TTCGAGGAGA ACGCCGCAGA CGAGGAAGAG TGA
 
Protein sequence
MAGIEHRQVD SDEAGMRLDR WFKVHFPGLG FGPLQKLLRS GQIRVDGARA KSDTRIQPGQ 
TIRIPPLGVD PKEKKTGPIG GRDLRQSPDG ELLSRMVLHE DAKVIVLNKP PGLAVQGGSG
VNRHIDKMLE AWTSQKGEKP RLVHRLDRDT SGVLVIARTR GAAQQLTAAF RERDTKKTYW
ALVRGVPRKR EDKISTWVVK EQTPDGDRVR IAKHGEDGAD HAISFYRIVE QAGQNLAWLE
MEPYTGRTHQ LRVHAAHIGH PIIGDPKYFE ADVNWTFPGG MQNRLHLHAR HIDIPHPNGG
RLKVTAPLPQ HMMQSWNLLG FEENAADEEE