Gene Slin_0250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_0250 
Symbol 
ID8723978 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp328572 
End bp330503 
Gene Length1932 bp 
Protein Length643 aa 
Translation table11 
GC content53% 
IMG OID 
ProductDEAD/DEAH box helicase domain protein 
Protein accessionYP_003385114 
Protein GI284035184 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.173354 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.00154512 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGGCCGACG AACCCCTTGC TCACGTTGAA GAACCTAAAG CGGCAGCTGC GGTTGCAGAA 
GTAGTAACGC CTAAGGCTGA TCCTAATCAG CTTTTATTCT CCAGCCTGGC CATTTCGCCC
GAGCTGTTGC AGGCTGTTAC GGATATGGGC TTCATTAGCC CATCGCCCAT TCAGGCCGAA
GCAATTCCAC CAATTCTGGA TGGTCGTGAC GTAATCGGAC AGGCCCAAAC GGGTACCGGT
AAAACGGCCG CCTTTGGTAT TCCTGCTCTT GATCTGATCG ATGTTCAGGA TCGTTCGGTA
CAAACGCTTA TCCTTTGCCC AACGCGGGAA CTGGCCTTGC AGGTAGCCGA AGAGATAAAG
AAACTAGCCA AATACAAGCG TGGTATCCGT ATCGAAGCTA TCTATGGCGG TGACTCCATT
GAGCGGCAGA TTCGGTCACT CAAGAGCGGT GTGCATATCG TAATCGGTAC GCCCGGCCGT
GTAATGGACC ACATGGAGCG AAATACCCTC AAACTCAACA ACGTTAAGAT GATGATTCTT
GACGAAGCGG ATGAGATGCT GGATATGGGC TTCCGGGAAG ATATTGAGAG CATTCTGGAA
GAAATGCCCG AAGAGCGGCA AACGATCCTG TTCTCGGCAA CGATGTCGAA GCCGATCATG
CAGATCACCC AGAAGTTCCA GAAAGATCCT GTGCTGGTGA AAGTCGTCAA GAAAGAATTG
ACGAACGTAA ACATCGAGCA GGTTTATTTT GAAGTAAAAT CGAAAGCAAA AGTTGAAGTG
ATGTGCCGTC TGATCGACAT GTACGATCTG AAACTGCTGC TGGTATTCTG TAATACAAAA
CGGAAAGTCG ACGAAATCGT TGAAGACCTG CAAATCCGGG GCTATCAGGC CGAAGGCTTG
CACGGCGATC TGCGCCAGGC GCAACGGAAC AATGTCATGA GCAAGTTCCG CGCCGGTACG
ACCAACATCC TGGTTGCTAC CGACGTAGCC GCTCGTGGTA TTGACGTTGA TGATGTCGAC
GCGGTTATCA ACTTCGACAT TCCCCTCGAC GAAGAATATT ACGTACACCG GATTGGTCGG
ACAGGCCGGG CGGGTAAATC GGGCCGGGCG TTCTCGTTCG TGGGTCGCGA TGAGAAATAC
CGTTTCCGCG AAATCCAGAC TTATACAAAA GTTAAGGTTG AGAAAGGTGT CATTCCTTCC
TTCGAAGACA TCGTTGGTGT TCGCAAAGCC CGTTTCATCG AGCAACTGCA ACAAACGATT
CAGGAAAGCA AAGACTTGAA CCTGTATGAC GATTTACTGA CGCAGCTCAA CCACGCCGGT
TTCTCGACCG AGCAGATTGT AGCCGCGCTG GTAAAACGCA GTATGGGTCT GGAGAAGAAC
GAATTCGCCG ATCAGAACCT CAATCTGGAA GATGATCGCC GGAATGGCCG CGACAAATAC
GCCGATCGTG GTCGGGGTGA AGGTGGTGGA CGCTTCGAAG ATCGTCGGGG TGGGTCACGC
TTTGGCGACC GCGATGAGCG GGGTAACAGC TCGCGTTTTG GTGACCGTCG TGAGGGTGGT
GATCGGGGTG GGTCACGCTT TGGCGACCGT CGCTCCGACG GTGGTGATCG TCCACGTTTC
AACGACCGGG ATCGGTCGGG CACAGGCAAA CCTTATTTCG ACCGCGACGA TCAGCGTGTT
CCCCGTGAAC GCGAAGCGAA CATGACCCGC CTGATGGTGA GCATTGGCCG CAAAGATTTC
GTCCGTCCGG GCGACATCGT AGGTGCCATT GCCGGTGAAG CCAACATTCC CGGTAACAGC
ATCGGTAGCA TTGATATCTT CGACAAGTTC ACCTACGTTG ATGTACCGAA AGATGTAGCC
AACCGCGTTG TCGACGCTAT GGAAGGCAAC ACCATTAAAG GACGCCGGGT TAATATTGAA
GTAGCACGGT AG
 
Protein sequence
MADEPLAHVE EPKAAAAVAE VVTPKADPNQ LLFSSLAISP ELLQAVTDMG FISPSPIQAE 
AIPPILDGRD VIGQAQTGTG KTAAFGIPAL DLIDVQDRSV QTLILCPTRE LALQVAEEIK
KLAKYKRGIR IEAIYGGDSI ERQIRSLKSG VHIVIGTPGR VMDHMERNTL KLNNVKMMIL
DEADEMLDMG FREDIESILE EMPEERQTIL FSATMSKPIM QITQKFQKDP VLVKVVKKEL
TNVNIEQVYF EVKSKAKVEV MCRLIDMYDL KLLLVFCNTK RKVDEIVEDL QIRGYQAEGL
HGDLRQAQRN NVMSKFRAGT TNILVATDVA ARGIDVDDVD AVINFDIPLD EEYYVHRIGR
TGRAGKSGRA FSFVGRDEKY RFREIQTYTK VKVEKGVIPS FEDIVGVRKA RFIEQLQQTI
QESKDLNLYD DLLTQLNHAG FSTEQIVAAL VKRSMGLEKN EFADQNLNLE DDRRNGRDKY
ADRGRGEGGG RFEDRRGGSR FGDRDERGNS SRFGDRREGG DRGGSRFGDR RSDGGDRPRF
NDRDRSGTGK PYFDRDDQRV PREREANMTR LMVSIGRKDF VRPGDIVGAI AGEANIPGNS
IGSIDIFDKF TYVDVPKDVA NRVVDAMEGN TIKGRRVNIE VAR