Gene Shewmr7_2820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_2820 
Symbol 
ID4255900 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp3339274 
End bp3340827 
Gene Length1554 bp 
Protein Length517 aa 
Translation table11 
GC content53% 
IMG OID638123497 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_738861 
Protein GI114048311 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAATTG ATCGTTTGGT TCCCCGCTTA GTGATTGGCG GGGCTTGCGC TCTGCTCAGC 
GGCTGTACCG TGCTAGGCCC AGACTATCAA CAGCCAGAAG TGCCAGAGAT CCAAACATGG
CAGAGCGCCA GTTCGCAGTT ATTTAGCGCG GCGCCATCGG CCAGCGATTA TCAGCAATGG
TGGTCGCAAC TTCAGGATCC TGTGCTCAGC AGCTTGATTG ACGAGGCATT GCTGAAAAAT
CCGGATGTGC GGATTGCAGG CTTGCGGATA CTCGAAGCGC AAGCACAATT AGGGATAGCC
GAGAGTCTGC GCAATCCTCA GTTAACCCAA GCCACTGCCC AATGGCTTGG CGCAGGTCAA
ACCCAAAGCG GCAACAGCAC CTCGGGCAGC AGTTACGGCG CAGCATTCAA TCTTGGCTGG
GAACTCGATT TTTGGGGTAA ATTCCAGCGA GGTATCGAAT CGGCCGATGC AAACTACTTT
GCCACTATCG CCCAATATGA TGATGTGCAA GTGTTGATGA TTGCTCAAGT GGCACAGCTG
TACGTCACCA TTCGCACCCT AGAGGCGCGG CTGCAAATTG CCCATGATAA TGCCCAAATC
CAAAAACGTA GTTTAGAAAT CACTCAGCAC CAGTTTCACA GCGGTAACAC TGCCGAGCTG
GACGTGCAAC AGGCTAAGAC CCAGTATTTA GGCACTCTTT CGACGATTCC GACATTAGAG
ACAAATCTGC GCCAAAGCCA AAATGCCCTC AGCACACTAC TGGCCAGAGC GCCGGGGCCA
CTTCCCGAAA TGGCGAGCAA TACCGGCGTG CTCCCACAGG GGCAATTGGC ATTAGTCACT
GAAATGCCCG CCGATTTATT ACGTCGGCGC CCTGATGTAC GCACCGCCGA GCGCCAGCTC
GCGACCCAAT CAGGGCAGAT TGGGATTGCC GAGAGCGATT TGTATCCCTC TATCACCTTG
GCTGGCACGC TAGGATTAAA TGCCACGGGC AGCGGTCACA GTATTTTCTC CTGGGGTGTG
GGGCCATCGA TTAGCTGGAA TATCCTCGAC AGCGGTCGGT TGACCAATCA AATCTTGGTG
CAAGATGCAC GCTTTGAGCA ATTACACGAA GTCTACCGTG AGACAGTGTT TAAAGCGGCG
CGGGAAGTCG ATGATGCCGC TATTGCCTTT GCCAATAGCG CAACGGAAAT TACTTTACTA
ACGCAAACTG GTGAAGCCGC GAGTCGCTCA CTCGAGATTG CCAACACTCA ATATCGTGAA
GGCATGGCTG ATTTCCAACG TGTGCTCGAT TCTCAACGCG CCCTCTTTAG TCAACAAGAA
CGGCTCGTAA ACAGTCGCGG CGCCCATATT GGCAATCTCA TCACCCTTTA CAAAGCGCTC
GGCGGTGGAT GGGAGCAAGG GCGACAACGC CCATTAGTGA GTCCAGAGGT AGATAAAAAG
CTTCGTAAGC GTGATGAATG GCTGCCATTA CTAGATGTAG TTAAGCCCAA AGCGGGCACT
CCAGCAGATC CTCAGCCAAC ATCGACTATT CAAAAGGGAA TTGTGAATGA CTGA
 
Protein sequence
MIIDRLVPRL VIGGACALLS GCTVLGPDYQ QPEVPEIQTW QSASSQLFSA APSASDYQQW 
WSQLQDPVLS SLIDEALLKN PDVRIAGLRI LEAQAQLGIA ESLRNPQLTQ ATAQWLGAGQ
TQSGNSTSGS SYGAAFNLGW ELDFWGKFQR GIESADANYF ATIAQYDDVQ VLMIAQVAQL
YVTIRTLEAR LQIAHDNAQI QKRSLEITQH QFHSGNTAEL DVQQAKTQYL GTLSTIPTLE
TNLRQSQNAL STLLARAPGP LPEMASNTGV LPQGQLALVT EMPADLLRRR PDVRTAERQL
ATQSGQIGIA ESDLYPSITL AGTLGLNATG SGHSIFSWGV GPSISWNILD SGRLTNQILV
QDARFEQLHE VYRETVFKAA REVDDAAIAF ANSATEITLL TQTGEAASRS LEIANTQYRE
GMADFQRVLD SQRALFSQQE RLVNSRGAHI GNLITLYKAL GGGWEQGRQR PLVSPEVDKK
LRKRDEWLPL LDVVKPKAGT PADPQPTSTI QKGIVND