| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1615 |
|---|
| Symbol | uvrC |
|---|
| ID | 4258713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1899519 |
|---|
| End bp | 1901348 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638122274 |
|---|
| Product | excinuclease ABC subunit C |
|---|
| Protein accession | YP_737670 |
|---|
| Protein GI | 114047120 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
|---|
| TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000543557 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.3636 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACAG GTTTTAACGC CCAGAGTTTT TTACGCACGG TTTCATCCTC TGCTGGGGTT
TATCGCATGT ATGACGTCAA AGGTGACGTC ATCTATGTGG GTAAAGCCAA AGATCTTAAG
AAGCGCTTAT CCTCCTATTT CCGTAAAAAC CTTGGGAATG TGAAAACCCA GGCGCTGGTG
TCCCATATCC ATCATATCGA TGTGACGCTG ACCCACAGCG AGACCGATGC GCTGCTGCTT
GAGAATGACT ATATCAAGCA GTACATGCCC AAATACAATG TGTTACTGCG GGACGATAAG
TCATACCCCT ATATTTTCTT GAGCCAACAC GAGCATCCAC GCCTTGCATA CCATCGCGGG
CCGCTGCGGG AGAAGGGCTA TTACTTTGGG CCTTATCCGA ATGGTGGCGC GGTGCGCGAA
AGTTTGCACT TGATGCAAAA GCTGTTTCCT ATCCGCCAGT GTGATGATCT CTATTATAAA
TCCCGCACTC GTCCCTGCCT GCAGTACCAG TTATCCCGTT GCAGCGCACC TTGCGTCGGT
AAGGTCAGTA ATGCGGAGTA TGATGAGCAG GTTAAACTCG CCAGTTTGTT TCTAAAGGGA
AAAGATAAAC AAGTTATCAG TGAACTCGTG GCTAAGATGG AAGAGGCCGC CGAGCAGCAA
GCCTATGAGC AAGCTGCGCG CTTTCGCGAT CAAATTATGG CGCTGCGCCG TGTGGCCGAG
CAGCAAGAAG TCTCGGGCAA TACCGGGGAT ATGGATGTTA TCGGCGTACA CTACGCCTCG
GGTATCGCCT GTTTTCACCT GTTATTTATC CGCGAAGGTA AAATTTTTGG TAGCCGCAGC
TATTATCCAA CGGTGCCCGC GCAAACGGAT ATTGAAGAAG TTTTACGTTC CTTCCTGCTA
CAGTTTTATT TAAATGCCGA TATTCAACGC ACCATTCCTA AGGAAGTGGT GATAAGTCAT
CACTTTGAAG AATTGCATGA GCTAGAGGCG GCCGTCTCTG AGGCGTTAAA CAAAAAGTTC
AGCATCAAAA CCAATGTGCG CGCCGATAGG GCAAGCTTTT TGCGCCTAGC GCTGACCAAT
GCCACTAATG CTGTGATGAC GCGCCTGTCC CATAAAAACA CCGTTGAACA ACGTTTTGTC
TTGTTGGAGG AAATCCTCGA GCTTAATGCG CCAATCCAGC GGATGGAGTG TTTCGATATT
AGCCATACCA TGGGGGAGAG CACGGTAGCC TCCTGCGTGG TGTTTAACCG CGAGGGGCCA
CATAAGGCCG AATACCGCCG TTACAATATC GAAGGCATTA CGCCCGGCGA TGATTATGCC
GCGATGAAAC AAGCCATTAG TCGTCGATTT GATAAAATCG ATGCCAGCGG CAAAATTCCT
GACATCCTAT TTATCGATGG CGGTCTAGGG CAGCTGCGTA TCGCGCAGCA AATAGTAGAT
GAGAAATTCG TTAATTTAGA TAAAGCGCCG CAACTGATTG GGGTGGCAAA GGGAGAGAGC
CGTAAACCTG GGCTTGAAAC CTTAATCTTT GGCGATACAG AAAGTAGCTT TTCCCTTGAG
GATGACTCGC CAGCGCTGCA CCTTATTCAA CATATTCGCG ATGAGTCTCA CCGCTTTGCG
ATTACAGGAC ATCGCAATCG TCGCCAGAAA ACCCGTAATA CCTCGACGCT CGAATCCATT
CCGGGCATTG GTCCTAAGCG GCGCAAGGCG TTATTGCAAC ATCTTGGTGG TTTACAGGAA
GTGAAGGGCG CGAGTGTGGC CGAGTTAGCG AAAGTGCCTG GTATTAGCAT CGAAATGGCA
CAAACCATTC ATGATGCATT GCGAGGGTGA
|
|---|
| Protein sequence | MSTGFNAQSF LRTVSSSAGV YRMYDVKGDV IYVGKAKDLK KRLSSYFRKN LGNVKTQALV
SHIHHIDVTL THSETDALLL ENDYIKQYMP KYNVLLRDDK SYPYIFLSQH EHPRLAYHRG
PLREKGYYFG PYPNGGAVRE SLHLMQKLFP IRQCDDLYYK SRTRPCLQYQ LSRCSAPCVG
KVSNAEYDEQ VKLASLFLKG KDKQVISELV AKMEEAAEQQ AYEQAARFRD QIMALRRVAE
QQEVSGNTGD MDVIGVHYAS GIACFHLLFI REGKIFGSRS YYPTVPAQTD IEEVLRSFLL
QFYLNADIQR TIPKEVVISH HFEELHELEA AVSEALNKKF SIKTNVRADR ASFLRLALTN
ATNAVMTRLS HKNTVEQRFV LLEEILELNA PIQRMECFDI SHTMGESTVA SCVVFNREGP
HKAEYRRYNI EGITPGDDYA AMKQAISRRF DKIDASGKIP DILFIDGGLG QLRIAQQIVD
EKFVNLDKAP QLIGVAKGES RKPGLETLIF GDTESSFSLE DDSPALHLIQ HIRDESHRFA
ITGHRNRRQK TRNTSTLESI PGIGPKRRKA LLQHLGGLQE VKGASVAELA KVPGISIEMA
QTIHDALRG
|
|---|
| |