| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0016 |
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| Symbol | fadB |
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| ID | 4258049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 19875 |
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| End bp | 22025 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638120607 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_736079 |
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| Protein GI | 114045529 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00124169 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0928746 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTACC AAAGTCCTAC AATTCAGGTT GAGTTACTCG AGGATAATAT TGCCAAGCTG
TGCTTTAACG CACCCGGTTC GGTGAACAAA TTCGACAGAG AAACACTCGC CTCACTCGAT
GCCGCATTAG ATAGCATTAA ACAACAATCA AACATTCAGG CTTTAGTGCT GACCTCAGGT
AAAGATACCT TTATCGTGGG TGCCGACATT ACTGAATTTT TAGGCTTATT CGCACAGGAT
GATGCGGTAC TGCTCTCTTG GGTTGAACAG GCCAACGCCG TATTCAACAA ACTCGAAGAT
TTACCTTTCC CAACCGCTTC AGCGATTAAA GGTTTCGCCC TAGGCGGCGG TTGTGAAACT
ATTCTGGCAA CGGATTTCCG TATCGCCGAC ACCACAGCCA AAATCGGCCT GCCCGAAACC
AAACTGGGCA TTATCCCAGG CTTTGGTGGC ACAGTGCGTT TACCACGTGT GATTGGTGCG
GATAACGCCC TTGAGTGGAT CACCACGGGT AAAGATCAGC GTCCAGAAGA TGCCTTAAAA
GTCGGTGCGG TTGATGCTGT TGTCGCGCCA GAGGCTTTAG AAGCCGCCGC CATTCAAATG
CTAAAAGATG CAGTTGCAGA AAAGCTTGAT TGGCAAGCCC GTCGCCACCG TAAGATGTCA
CCACTGACCC TACCAAAACT CGAAGCCATG ATGTCTTTCA CTACCGCTAA AGGCATGGTG
TTTGCGGTTG CGGGTAAACA CTACCCAGCA CCAATGGCGG CAGTCAGCGT AGTTGAACAA
GCGGCGACCA AAGGCCGCAG CGACGCACTG CAAATTGAAC ATCAAGCGTT TATCAAGTTA
GCGAAAACCG ATGTTGCCAA GGCGTTGATC GGTATCTTCT TGAATGACCA ATTAGTCAAA
GGCAAGGCCA AGAAAGCGGG CAAACTCGCC AAAGATGTGA AAAGCGCCGC CGTATTAGGT
GCTGGCATCA TGGGTGGCGG TATCGCTTAC CAAAGCGCCA GCAAAGGCAC GCCAATCGTG
ATGAAGGATA TCGCTCAACC TGCATTAGAT TTAGGTTTAG GCGAAGCCGC TAAACTGTTA
TCTGCACAAG TTGCTCGCGG CCGCTCTACC CCAGAAAAAA TGGCTAAGGT GCTGAACAAC
ATCACTCCAG CCTTAGACTA TGCTCCAGTT AACCATGCTG ACGTGGTTGT CGAAGCCGTA
GTTGAGCATC CAAAAGTGAA GGCACAAGTA CTGGCTGAAG TAGAGCAATA CGTGAGTGAA
GATGCGATTA TCGCCTCTAA CACGTCAACT ATTTCAATCA ACCTGCTCGC GAAGAGCATG
AAGAAGCCTG AGCGTTTCTG CGGTATGCAC TTCTTCAACC CAGTGCACAA AATGCCATTG
GTTGAAGTTA TTCGTGGCGA GCACAGCTCA GAAGAAACCA TCGCATCTGT TGTTGCCTAC
GCCAGCAAAA TGGGTAAAAC CCCAATCGTT GTTAACGATT GCCCGGGTTT CTTCGTTAAC
CGCGTACTCT TCCCTTACTT TGCGGGCTTT AACGGCCTGC TCGCCGAAGG TGGCGACTTT
GCCGCTATCG ATAAAGTGAT GGAAAAACAA TTCGGCTGGC CAATGGGTCC TGCTTACCTG
CTAGACGTTG TCGGCCTAGA CACGGGTCAC CACGCGCAAG CGGTAATGGC CGAAGGCTTC
CCCGATCGTA TGGGCAAATC TGGCAATGAC GCGATTGACG TGATGTTTGA GAACAAGCGT
CTCGGTCAGA AGAATGGTAA AGGTTTCTAC GCTTACTCTG TAGATAGCCG TGGTAAACCA
AAGAAAGATG TCGACCCAAC CAGCTACGAG CTGCTGAAGG CCGCCTTTGG TGAGCAAAAA
GCATTCGATG CGGATGAAAT CATCGCCCGC ACTATGATCC CAATGATTAT CGAAACCGTT
CGCTGTTTAG AAGAAGGCAT TGTGGCATCA CCTGCCGAAG CGGATATGGG CTTGGTATAT
GGTTTAGGTT TCCCTCCATT CCGTGGTGGT GTATTCCGTT ACTTAGATAC TATGGGCGTA
GCGAACTTTG TCGCCTTAGC TGATAAATAC GCTCACTTAG GTGGTTTGTA TCAAGTCACC
GACGCCATGC GCGCCCTTGC AGCCAACAAC GGTAGCTACT ACCAAGCCTA A
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| Protein sequence | MIYQSPTIQV ELLEDNIAKL CFNAPGSVNK FDRETLASLD AALDSIKQQS NIQALVLTSG
KDTFIVGADI TEFLGLFAQD DAVLLSWVEQ ANAVFNKLED LPFPTASAIK GFALGGGCET
ILATDFRIAD TTAKIGLPET KLGIIPGFGG TVRLPRVIGA DNALEWITTG KDQRPEDALK
VGAVDAVVAP EALEAAAIQM LKDAVAEKLD WQARRHRKMS PLTLPKLEAM MSFTTAKGMV
FAVAGKHYPA PMAAVSVVEQ AATKGRSDAL QIEHQAFIKL AKTDVAKALI GIFLNDQLVK
GKAKKAGKLA KDVKSAAVLG AGIMGGGIAY QSASKGTPIV MKDIAQPALD LGLGEAAKLL
SAQVARGRST PEKMAKVLNN ITPALDYAPV NHADVVVEAV VEHPKVKAQV LAEVEQYVSE
DAIIASNTST ISINLLAKSM KKPERFCGMH FFNPVHKMPL VEVIRGEHSS EETIASVVAY
ASKMGKTPIV VNDCPGFFVN RVLFPYFAGF NGLLAEGGDF AAIDKVMEKQ FGWPMGPAYL
LDVVGLDTGH HAQAVMAEGF PDRMGKSGND AIDVMFENKR LGQKNGKGFY AYSVDSRGKP
KKDVDPTSYE LLKAAFGEQK AFDADEIIAR TMIPMIIETV RCLEEGIVAS PAEADMGLVY
GLGFPPFRGG VFRYLDTMGV ANFVALADKY AHLGGLYQVT DAMRALAANN GSYYQA
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