| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3462 |
|---|
| Symbol | |
|---|
| ID | 4254028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4140353 |
|---|
| End bp | 4141642 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638120100 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_735585 |
|---|
| Protein GI | 113971792 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCAAGT CACCGAGCGA GCCTAAGCCT TTGAATAAGT TTCAGAATGC GGCGCATCCT
GCATCCTCTG GCTTTCTGGC GCAGCTAGTG GCATTAGTGC GCCGCGAGCT TAGGGCGCTA
TGGCGCGATC CTTGGCAACT GGCCCTGATC AGTTATATCC CGCTGCTCGG CATCTTGTGT
CTCTGGTGGC TATTTAGTGC TGGGCTACCA CGGCAATTAC CCGTGGCGAT TGTTGACCAA
GACCACAGCC AGCTGAGCCG AATGTTGACC CGTCAACTTA AAGCCAACCC TGTCACCGAG
CCGCGAAGTT TTACCGATCT CCCTTCGGCC GTTGCGGCCA TGCAACAGGC GCAGGTCTAT
GCCGTGGTGG TGTTTCCCCA TGATATGAAA AAGGATTTAC TCACCGGCCA TAAACCGACA
ATCGATGTGC GTTACAACAG CCAGTTTTTG TTGGTGGGTA AGCTGTTGTC GAGTCAAATT
CAGTTGAGTC TAGGCGATGG GTTGTTGCAG ATCGCAGGCC TTAAGCAGCT GATGACGGGC
ACGCCAAAAT CCCAAGTGGC GGTGAACTTA AGCCCAGTGA AAAGCCAAAC GACCGCACTG
TTTAACCGTA ACAATAACTA CATAGGTTTT TTAGTGCCGC CGGTATTGGT CGCGCTGTGG
CAGTTGTTAT CCATGTTGGT GATGGCCAAC AGCTTAAATC GCGAGTTGCA ACTTAATGCC
GCGCATTCAG AGGAGGGGCT CTCCAATCGA TTGACCGAGC ATTTTTGGCC TAAAGTGTTG
GCTAAAATCC TGTTATTTAC CCCGATATTG ATGCTCCAAG GCGGGTTTAT CCTCGCTTGG
CTGTATCTGT ATCTGGCTTT GCCTTTTGCG GGCAGTTTAG CGCTGCTGCT AGTTGCTCAG
TTGTTCATGC TGCTGGCGGT GTGGAGCCTT GTGTTGTTTA TCTTTGTGCT GATGCGTGAT
AGCGCGCGGG TCATCAGTTT TTGTACTGCG CTGTTTGCGC CAGCCTTTGC TTTTATGGGG
ATCACTTTCC CCACCCATGA AATGCCGCAA CTCGCCCAGT GGTGGCGACT CATCATGCCA
TCGAGCCATT ATATTGAGTC CCATGTGAGC GTGGTGAGTT ATGGCGCGGC GTGGCCGACG
GTAGCGCAGC AATTGAGTAG TTATTGGGGT TTTATCGGTT TATTGCCGCT GATTTATCTC
TTGGCTCACA AATTACTGCC GATGACGGTA AAAGCTCAGG CTGAAGCGGC GGAATACGAC
GCGGCGCCTC TGCCTGCGAA GGGGCAATAG
|
|---|
| Protein sequence | MAKSPSEPKP LNKFQNAAHP ASSGFLAQLV ALVRRELRAL WRDPWQLALI SYIPLLGILC
LWWLFSAGLP RQLPVAIVDQ DHSQLSRMLT RQLKANPVTE PRSFTDLPSA VAAMQQAQVY
AVVVFPHDMK KDLLTGHKPT IDVRYNSQFL LVGKLLSSQI QLSLGDGLLQ IAGLKQLMTG
TPKSQVAVNL SPVKSQTTAL FNRNNNYIGF LVPPVLVALW QLLSMLVMAN SLNRELQLNA
AHSEEGLSNR LTEHFWPKVL AKILLFTPIL MLQGGFILAW LYLYLALPFA GSLALLLVAQ
LFMLLAVWSL VLFIFVLMRD SARVISFCTA LFAPAFAFMG ITFPTHEMPQ LAQWWRLIMP
SSHYIESHVS VVSYGAAWPT VAQQLSSYWG FIGLLPLIYL LAHKLLPMTV KAQAEAAEYD
AAPLPAKGQ
|
|---|
| |