| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2552 |
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| Symbol | |
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| ID | 4253123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3036976 |
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| End bp | 3038952 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638119187 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_734680 |
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| Protein GI | 113970887 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000125111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTATTA AGTCGAGTAT AAATCCACCG GTTTTTTATT CGTCGGTCTT TTTTATCACA
TTAATGGTGA TGATCTGCGC CATTTGGCCG ACAGAGGCCA ATCACTTTTT TAAATCCATG
CAGTCGTGGT TAGAAGCAAA GGCGGGTTGG TTATATATCC TTGGCGTGGC GATTTTTCTA
ATTTTTATCA TCTTTGTCAT GGTCAGCCGC TTTGGTGATA TTAAGCTCGG CCCCGACCAT
GCGGTACCCG ACTATAGCTA TAAGAGCTGG ATTTCCATGC TGTTTTCGGC GGGGATGGGG
ATTGGGTTGA TGTTCTTTGG CGTCGCCGAA CCCGTGATGC ATTACTTGGC GCCGCCCGAT
GCAACGCCTG AGACCTTGGC CGCCGCCAAA GAGGCCATGA AGATCACTTT CTTCCATTGG
GGCATACATG CGTGGGCGAT TTACGGGGTG GTTGCCCTGA GTTTGGCCTA TTTTGCCTAT
CGGCATAAGT TGCCGCTCTT GCCCCGCAGC GCACTCTATC CCTTAATCGG TGAGCGCATC
CATGGCCCGA TTGGCCACTG CGTCGATACC TTTGCGGTAT TGGGGACTAT GTTCGGGGTG
GCGACCTCCC TAGGGTTTGG GGTGTTGCAG GTTAACTCGG GCTTAAGCTA TTTATTCGAG
CAACTGCCGA ATAACACCAC AGTGCAAGTA TCGCTGATTA TTGGCATTAC CCTACTCGCG
ACTCTGTCAG TATTTTCGGG CCTAGATAAA GGGGTGAAGC GCTTAAGTGA GCTTAACTTA
GGTTTAGCTC TTATTCTGCT GCTGATTGTG TTAATTCTTG GCCCAACCGT GATGTTGCTG
CAAGCCTTCG TACAAAATAC CGGTAGTTAT CTGAGTGATA TTGTTAATAA AACCTTTAAT
CTGTACGCCT ATCAGCATAA GGAAGACTGG CTGGGCGGTT GGACGCTACT CTACTGGGGT
TGGTGGATCT CCTGGTCACC TTTTGTCGGC ACCTTTATTG CGCGGGTGAG TCGTGGCCGC
ACCATACGGG AGTTTTTAGT CGGCATTTTA TTTGTGCCCT CGGCGCTGAC CTTTTTGTGG
ATGACGGTAT TTGGTAACTC GGCTATCGAC GCCATTATGA ATCAAGGCGC GACCTACCTG
AGCGATGCAG TGAATACCAA TGTGCCCGTG GCCTTGTTTG TGTTTTTTGA ACATATGCCG
TTCCCGCATC TCCTGTCGGG GATTGGGATT TGTTTAGTGG TCACCTTTTT TGTTACCTCA
TCGGATTCTG GATCGCTTGT AATCGACAAC CTAACCTCGG GAGGCGATAA CAATGCGCCC
GTCTGGCAAC GGGTGTTTTG GGCACTATTA CAAGGGGTAG TGGCCTCGGT GCTGCTGCTT
GCCGGCGGCT TACAGGCCTT ACAAACTGCG GCCATTGCCA GTGCCATGCC ATTTTTATGT
GTGATGCTGC TGATGTGTTT GGGGCTGTAT AAGGCGCTGA AAGACGATTG GCTTAAGATC
AACAGTGTGC AGATGCATAC CACCAGTGTG CAATACGCTA AGACCAATAT CAGTTGGGAG
GAGCGTATCG AAGTCTTAGT GTCCCATCCT ACCGAAGATG AGGCGCGAAT TTTCCTCAAT
AATGTCGCGA CACCGGCGTT ATCTAAGGTG TGTCAGCAAT TTATGACCAA GGGCCTGACG
GCGGATCTCG AGTATCTCGA CGGCAAAGTG CGATTGGTGA TCAGCAACGA AGCCTATCAA
CCCTTCGTAT ACGGTGTGCG GATGCGCTGT TTTGAAATCG TCAATCCGGT TGGTGAAGAG
TTAGAGCAGG GCAACAATTG GTACTATCGC GCCGAAGTGT ACTTAGAGCA GGGCGGCCAA
CACTATGATG TGATGGGCTA TACCGAAGAG CAGCTATTGG CTGACGTGGT TACCCAATAC
GAGAAATACC TGCACTATTT GCACTTGTCC AATGCCGACC AAGGACATGT AACCTAA
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| Protein sequence | MSIKSSINPP VFYSSVFFIT LMVMICAIWP TEANHFFKSM QSWLEAKAGW LYILGVAIFL
IFIIFVMVSR FGDIKLGPDH AVPDYSYKSW ISMLFSAGMG IGLMFFGVAE PVMHYLAPPD
ATPETLAAAK EAMKITFFHW GIHAWAIYGV VALSLAYFAY RHKLPLLPRS ALYPLIGERI
HGPIGHCVDT FAVLGTMFGV ATSLGFGVLQ VNSGLSYLFE QLPNNTTVQV SLIIGITLLA
TLSVFSGLDK GVKRLSELNL GLALILLLIV LILGPTVMLL QAFVQNTGSY LSDIVNKTFN
LYAYQHKEDW LGGWTLLYWG WWISWSPFVG TFIARVSRGR TIREFLVGIL FVPSALTFLW
MTVFGNSAID AIMNQGATYL SDAVNTNVPV ALFVFFEHMP FPHLLSGIGI CLVVTFFVTS
SDSGSLVIDN LTSGGDNNAP VWQRVFWALL QGVVASVLLL AGGLQALQTA AIASAMPFLC
VMLLMCLGLY KALKDDWLKI NSVQMHTTSV QYAKTNISWE ERIEVLVSHP TEDEARIFLN
NVATPALSKV CQQFMTKGLT ADLEYLDGKV RLVISNEAYQ PFVYGVRMRC FEIVNPVGEE
LEQGNNWYYR AEVYLEQGGQ HYDVMGYTEE QLLADVVTQY EKYLHYLHLS NADQGHVT
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