| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1331 |
|---|
| Symbol | |
|---|
| ID | 4251351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1543063 |
|---|
| End bp | 1544136 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638117916 |
|---|
| Product | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase |
|---|
| Protein accession | YP_733467 |
|---|
| Protein GI | 113969674 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0472] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase |
|---|
| TIGRFAM ID | [TIGR02380] undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000372635 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCAA ACATCGCTGT TTTATTTACT TTTCTAATTT CTTTTATCAG TTTGTTTGTA
TTTCGCAAGG TCGCTCAACG AATTGGTTTG GTCGATAAAC CGAATGAGCG TAAACACCAT
ACTGGCCAAA TCCCCTTGGT CGGTGGGGTG AGCGTATTTA TGACCATGAT GTTGGTGTTG
TGGCTTATTC CAACGCTGTT AATTGAACCG GTTTTGTATG CGAGCTGCGC CTTTATTCTT
GTGGTTATTG GTGCGATTGA TGACCGCTTC GATATTAGCT TTAAACTTCG GCTAGTGGTT
CAGGCGCTTA TATCACTGTT AATGATCGTG ATAGGAGAGC GCAGTTTATA TAATTTAGGC
TACTTGATGG GCAGCGAGGC GATATATTTG CCCGAGCCTA TTAGTATTTT GCTGACTATC
TTTGCGGTTA TTGGTGCGAT AAATGCCTTT AATATGGTCG ATGGCATTGA CGGCTTGCTG
GGCGGTTTAG CGTCTGTCAC TTTTGGCGGC TTAGGTATTT TATTTTATCT GCATGGTATG
TATGGTTTTG CTATTTTTTG TGGTTTGCTG GTTACAGCGA TGCTGCCTTA CATCATGCTT
AATTTAGGCT TTCCGTTCGG GCGACGTTTT AAGGTGTTCA TGGGCGATGC GGGGAGCATT
TTTATCGGCT TTACTGTCAT TTGGCTGCTG ATTGTGGCCA GTCAGGGTGA GCGAGCTACC
GCCATTCGCC CGGTTACCGC ATTGTGGCTA ATTGCTTTAC CGCTGATGGA TATGGTGTGC
ATCATGATCC GCCGTATTCG TAAAGGCCAA TCGCCATTTA AACCCGACCG AGAGCATTTA
CACCATATTT GTCAACGTCT TGGATTAACC TCCCATATGT CACTTATGAT GATTTGCACA
GCTGCAGGGA CTATGGCAGC CATTGGTATT TGGTCTGAGC TTGCTAAAAT AGATGAAAAT
ATTATGTTTT ATGCATTTTT GGCTACTTTT GCTTGTTATT TTACGATAAT GAATAACATT
TGGCGTATTA CTGCATTTTT GCGTAGAGAC GTAAAGTTTT TTAAATCAAT TTAA
|
|---|
| Protein sequence | MSANIAVLFT FLISFISLFV FRKVAQRIGL VDKPNERKHH TGQIPLVGGV SVFMTMMLVL
WLIPTLLIEP VLYASCAFIL VVIGAIDDRF DISFKLRLVV QALISLLMIV IGERSLYNLG
YLMGSEAIYL PEPISILLTI FAVIGAINAF NMVDGIDGLL GGLASVTFGG LGILFYLHGM
YGFAIFCGLL VTAMLPYIML NLGFPFGRRF KVFMGDAGSI FIGFTVIWLL IVASQGERAT
AIRPVTALWL IALPLMDMVC IMIRRIRKGQ SPFKPDREHL HHICQRLGLT SHMSLMMICT
AAGTMAAIGI WSELAKIDEN IMFYAFLATF ACYFTIMNNI WRITAFLRRD VKFFKSI
|
|---|
| |