Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1313 |
Symbol | |
ID | 4251333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1520089 |
End bp | 1521558 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638117898 |
Product | amino acid/peptide transporter |
Protein accession | YP_733449 |
Protein GI | 113969656 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3104] Dipeptide/tripeptide permease |
TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000607679 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.565693 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGTAG CAAAACCACA GGGGACGATG CTTGGTCATC CCAAGGGCCT ATTCCTACTT TTTACAACCG AACTTTGGGA ACGTTTTAGT TATTATGCAA TGCGCGCCAT TCTGGTGCTG TATTTAGTCG ATAAAGTTCA GAGTGAAGGG GGGCACGGTT TAGGATGGTC GCAAGCCGAT GCGATTTCGC TCTACGGAAC ATTTACAGGT CTGGTTTACT TAACGCCTTT ACTCGGCGGT TGGTTAGCTG ACACCTTTTT AGGTCAACGC CGCGCCATCA TGATTGGCGG TACGTTAATG GCCGCAGGTC AATTTATTCT TGGTACTCCT CATGCGTGGG TACCAGGTAT GGAAACTGAA GTATTCTATG TCGGCTTAGG CACTTTAATC CTAGGTAACG GTCTATTTAA ACCCAATATT TCCACTATGG TGGGTGACCT ATACGAAGAA GGCGACCATC GCCGTGATGG TGCTTTCACC ATTTTCTACA TGGGTATCAA CGTTGGTGCT TTCCTCTCCG GTATTATCGT AGGCTCTGTT GTCGCAGCTT ATGATGGTAA CTTCCAAGCC GGCTTTATCT GTGCGGGCAT TGGTATGATC CTGTCGTTAA TCATCCAACT TCTGTTTGCA CAAAAATTAC TCGGTAATAT TGGTAGAACT CCAGCCGCTA AACTTGAGCG TGAAAAAGCT GCTGAAAAAG GCGAAGTACG TAAAGAACCT CTTACTAAAG TTGAGCGTGA TCGTATTAAA GTCATCATGG TGATGGGTCT ATTCACTATC ATCTTCTGGG CAGGCTTTGA GCAAGCTGGC GGCCTGATGA ACCTGTTCAC TAACGACTTT ACCGACCGTA TGATCGGTAC TTGGGAAGTA CCTACCACTT GGTTCCAATC ATTAAACGCG ATGTTTATCG TGATTTTCGC ACCTGTTGTA GCCTCTATTT GGGTACGACT CGGTAAGAAT GAACCTAACT CACCTGTGAA GTTTGCTTTG GGCCTAGTGC TGTTAGCCGT AGGTTTCCTA TTTATGATCG GTGCCGTGGT TGAAATGGGC GGTGATGCTT CTGCTAAATC AAGCATGTGG TGGTTAGTCG GTGCTTATTT CTTCCATACC ATGGGTGAAC TTTGCTTATC ACCAATCGGT TTATCTATGG TCACTAAGTT AGCCCCACTG CGTATCGCTT CGTTAATGAT GGGTTCTTGG TTCCTTTTCG TTGCTGCAGC GAACAAAATT GGTGGCGTGG TTGGTTCATT TATCGGCCAT GGCGGCGAAA AAGAGGAGCA GCTCGCTAAT GCGATGGCGA TCTTCTCCGG TATCGCCATT ACAGCTGCAC TTTCCGGTGT GATCTTATAC TTTATGGCGG ACAAATTAGT CGATTGGATG CATGGCGCAG AAAGCAAGCA TCACAACGAA GCCGAAGCGT TAGAAGATGA AATTGCTGTA ACCGGTGAGC ATGAAGCGAT TAAACGTTAA
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Protein sequence | MSVAKPQGTM LGHPKGLFLL FTTELWERFS YYAMRAILVL YLVDKVQSEG GHGLGWSQAD AISLYGTFTG LVYLTPLLGG WLADTFLGQR RAIMIGGTLM AAGQFILGTP HAWVPGMETE VFYVGLGTLI LGNGLFKPNI STMVGDLYEE GDHRRDGAFT IFYMGINVGA FLSGIIVGSV VAAYDGNFQA GFICAGIGMI LSLIIQLLFA QKLLGNIGRT PAAKLEREKA AEKGEVRKEP LTKVERDRIK VIMVMGLFTI IFWAGFEQAG GLMNLFTNDF TDRMIGTWEV PTTWFQSLNA MFIVIFAPVV ASIWVRLGKN EPNSPVKFAL GLVLLAVGFL FMIGAVVEMG GDASAKSSMW WLVGAYFFHT MGELCLSPIG LSMVTKLAPL RIASLMMGSW FLFVAAANKI GGVVGSFIGH GGEKEEQLAN AMAIFSGIAI TAALSGVILY FMADKLVDWM HGAESKHHNE AEALEDEIAV TGEHEAIKR
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