Gene Shewmr4_1313 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1313 
Symbol 
ID4251333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1520089 
End bp1521558 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content46% 
IMG OID638117898 
Productamino acid/peptide transporter 
Protein accessionYP_733449 
Protein GI113969656 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3104] Dipeptide/tripeptide permease 
TIGRFAM ID[TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000607679 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.565693 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGTAG CAAAACCACA GGGGACGATG CTTGGTCATC CCAAGGGCCT ATTCCTACTT 
TTTACAACCG AACTTTGGGA ACGTTTTAGT TATTATGCAA TGCGCGCCAT TCTGGTGCTG
TATTTAGTCG ATAAAGTTCA GAGTGAAGGG GGGCACGGTT TAGGATGGTC GCAAGCCGAT
GCGATTTCGC TCTACGGAAC ATTTACAGGT CTGGTTTACT TAACGCCTTT ACTCGGCGGT
TGGTTAGCTG ACACCTTTTT AGGTCAACGC CGCGCCATCA TGATTGGCGG TACGTTAATG
GCCGCAGGTC AATTTATTCT TGGTACTCCT CATGCGTGGG TACCAGGTAT GGAAACTGAA
GTATTCTATG TCGGCTTAGG CACTTTAATC CTAGGTAACG GTCTATTTAA ACCCAATATT
TCCACTATGG TGGGTGACCT ATACGAAGAA GGCGACCATC GCCGTGATGG TGCTTTCACC
ATTTTCTACA TGGGTATCAA CGTTGGTGCT TTCCTCTCCG GTATTATCGT AGGCTCTGTT
GTCGCAGCTT ATGATGGTAA CTTCCAAGCC GGCTTTATCT GTGCGGGCAT TGGTATGATC
CTGTCGTTAA TCATCCAACT TCTGTTTGCA CAAAAATTAC TCGGTAATAT TGGTAGAACT
CCAGCCGCTA AACTTGAGCG TGAAAAAGCT GCTGAAAAAG GCGAAGTACG TAAAGAACCT
CTTACTAAAG TTGAGCGTGA TCGTATTAAA GTCATCATGG TGATGGGTCT ATTCACTATC
ATCTTCTGGG CAGGCTTTGA GCAAGCTGGC GGCCTGATGA ACCTGTTCAC TAACGACTTT
ACCGACCGTA TGATCGGTAC TTGGGAAGTA CCTACCACTT GGTTCCAATC ATTAAACGCG
ATGTTTATCG TGATTTTCGC ACCTGTTGTA GCCTCTATTT GGGTACGACT CGGTAAGAAT
GAACCTAACT CACCTGTGAA GTTTGCTTTG GGCCTAGTGC TGTTAGCCGT AGGTTTCCTA
TTTATGATCG GTGCCGTGGT TGAAATGGGC GGTGATGCTT CTGCTAAATC AAGCATGTGG
TGGTTAGTCG GTGCTTATTT CTTCCATACC ATGGGTGAAC TTTGCTTATC ACCAATCGGT
TTATCTATGG TCACTAAGTT AGCCCCACTG CGTATCGCTT CGTTAATGAT GGGTTCTTGG
TTCCTTTTCG TTGCTGCAGC GAACAAAATT GGTGGCGTGG TTGGTTCATT TATCGGCCAT
GGCGGCGAAA AAGAGGAGCA GCTCGCTAAT GCGATGGCGA TCTTCTCCGG TATCGCCATT
ACAGCTGCAC TTTCCGGTGT GATCTTATAC TTTATGGCGG ACAAATTAGT CGATTGGATG
CATGGCGCAG AAAGCAAGCA TCACAACGAA GCCGAAGCGT TAGAAGATGA AATTGCTGTA
ACCGGTGAGC ATGAAGCGAT TAAACGTTAA
 
Protein sequence
MSVAKPQGTM LGHPKGLFLL FTTELWERFS YYAMRAILVL YLVDKVQSEG GHGLGWSQAD 
AISLYGTFTG LVYLTPLLGG WLADTFLGQR RAIMIGGTLM AAGQFILGTP HAWVPGMETE
VFYVGLGTLI LGNGLFKPNI STMVGDLYEE GDHRRDGAFT IFYMGINVGA FLSGIIVGSV
VAAYDGNFQA GFICAGIGMI LSLIIQLLFA QKLLGNIGRT PAAKLEREKA AEKGEVRKEP
LTKVERDRIK VIMVMGLFTI IFWAGFEQAG GLMNLFTNDF TDRMIGTWEV PTTWFQSLNA
MFIVIFAPVV ASIWVRLGKN EPNSPVKFAL GLVLLAVGFL FMIGAVVEMG GDASAKSSMW
WLVGAYFFHT MGELCLSPIG LSMVTKLAPL RIASLMMGSW FLFVAAANKI GGVVGSFIGH
GGEKEEQLAN AMAIFSGIAI TAALSGVILY FMADKLVDWM HGAESKHHNE AEALEDEIAV
TGEHEAIKR