Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1222 |
Symbol | |
ID | 4251261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1420376 |
End bp | 1421269 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638117807 |
Product | LysR family transcriptional regulator |
Protein accession | YP_733359 |
Protein GI | 113969566 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.907683 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTACCTG TGATGAGTCT AGATGGCTTG ATAGTGCTCG ATGCTATTGA TAAAAAAGGA AGTTTTTCGG CTGCGGCCGA TTCCTTATTC CGGGTGCCAT CGGCGCTGAC CTACACAGTG CAGAAATTAG AGAGCGACTT AGGGGTAAAA TTATTTGAAC GTAAGGGCCA GCGCGCGGAA CTGACCTTAG TTGGCCAGCT AGTATTACGC CAAGGGCGGG AGATTTTAGC CGCCACCGCC AGGCTTGAGG AGGCGGTTCG CCAACTCGAA ACGGGCTGGG AGTCGGCATT AACCTTAGCC ATAGATACTG TGGTGCCCGA TTTACCACTG CTTAAACTGA TTGCTGAATT TACCGAGTTA GGTAAACAGG TGACCATCAA TATCACCGAG GAGTCATTGG GTGGCGGTTG GGATGCGCTG TATTCGGGCC GCGCCGATAT TGCCATTGGG GTCACGGGGG AGTTACCTAA GGGGCAATAT CACTTAGTCG AAATCGGCAT GCTTGAATTC GTGTTTGCCC TTGCGCCTCA CCATCCCTTG GCACAGTTTG ACCATCCCAT CTCGACCGAA GCCCTGTTGC AATTTCCCTC CGTGGTGGTG GCTGACAGCT CAACGGCGCT CGCGCAGCGC TCCAGTGGGT TGTTTGATAG TCGCCAAGTC ATTCGCGTGC CGAACATGCA GACCAAGATT AAAGCCCAGC AACTTGGGCT GGGTGTGGGC TATCTTCCGA AACATTTGAT CCGCGAAGAA CTCGCTTCAG GCGTATTAGT CGCGTGCAAG GTTGAGATCC CAAGACCGGC GCAGCCGGTG TTTCTCGCAT GGCGCAAGGG AAATAAAGGC AAAGCGCAGG CGTGGTTTGC CGAACGTTTA CCCCATTGCG ACTGGTTGTT TTAG
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Protein sequence | MLPVMSLDGL IVLDAIDKKG SFSAAADSLF RVPSALTYTV QKLESDLGVK LFERKGQRAE LTLVGQLVLR QGREILAATA RLEEAVRQLE TGWESALTLA IDTVVPDLPL LKLIAEFTEL GKQVTINITE ESLGGGWDAL YSGRADIAIG VTGELPKGQY HLVEIGMLEF VFALAPHHPL AQFDHPISTE ALLQFPSVVV ADSSTALAQR SSGLFDSRQV IRVPNMQTKI KAQQLGLGVG YLPKHLIREE LASGVLVACK VEIPRPAQPV FLAWRKGNKG KAQAWFAERL PHCDWLF
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