Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0894 |
Symbol | |
ID | 4251685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1045662 |
End bp | 1046657 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638117457 |
Product | trans-hexaprenyltranstransferase |
Protein accession | YP_733031 |
Protein GI | 113969238 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000238398 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCCAC AACCAGAGTC TATTATGGAT TTAAACGCTA TTCGTCAACT GGCTGACACT GATATGCAAG CAGTCAATCA GCTGATCTAT AAACAGCTGG AGTCAGATGT CGCCCTGATT AACCAGTTAG GTTTCTACAT TATTAATGGT GGTGGTAAAC GTCTTCGTCC TTTACTGTCC GTCCTCGCAG CGCGCGCCGT CGACTATCAA GGTGAAGCCC ACCTTAAGCT TGCCGCGATT ATTGAATTTA TTCATACCGC TTCATTACTG CACGATGATG TGGTCGATGA ATCGACCCTC AGACGCGGCC GCGAAACCGC CAACGCACTC TTTGGTAACA GCGCCAGTGT ATTAGTAGGT GACTTCCTTT ATACCCGCTC ATTCCAAATG ATGACCGAAC TCGACAGCAT GCGAGTGCTG CGTGTATTAG CCGATACCAC TAACGTATTG GCCGAAGGTG AAGTATTACA GCTAATGAAC TGTAACGATC CTAATACCAC AGAAGAAAGC TATATGCGGG TGATCTATTG CAAGACCGCC AAGCTATTCG AAGCCGCCAC GTTACTGGCC GCGGTATTAG CCGGCGCTAC ACCCGAGCAA GAAACCGCAT TAGGCGACTA TGGTAAGTAT TTAGGCACCG CCTTCCAGCT GACCGACGAT TTGCTCGACT ACACCGCCGA CAGTGAAGAG TTAGGTAAAA ACATCGGTGA TGATCTCGCC GAAGGTAAAC CGACCTTACC GCTGATCTAT GCCATTGCCC ATGGCACAGA AGAAGAGCAG CAACTCATTC GCCAAGCCAT TGAGCAAGGT GATGGCACCC ACGCCATTGA GAAAATAGTT GCCGCTCTGC ATCACTGCGG CGCGCTCACT TACACTCAGC AAAAAGCTAT TGAAGAATCA AATAAAGCGA TTGCGGCGCT GGCAGTATTA CCCGACAGTG ATTTCAAAAC CGCATTAATC TCACTGGCGA AAATCTCCGT TGATCGTAAC CACTAA
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Protein sequence | MAPQPESIMD LNAIRQLADT DMQAVNQLIY KQLESDVALI NQLGFYIING GGKRLRPLLS VLAARAVDYQ GEAHLKLAAI IEFIHTASLL HDDVVDESTL RRGRETANAL FGNSASVLVG DFLYTRSFQM MTELDSMRVL RVLADTTNVL AEGEVLQLMN CNDPNTTEES YMRVIYCKTA KLFEAATLLA AVLAGATPEQ ETALGDYGKY LGTAFQLTDD LLDYTADSEE LGKNIGDDLA EGKPTLPLIY AIAHGTEEEQ QLIRQAIEQG DGTHAIEKIV AALHHCGALT YTQQKAIEES NKAIAALAVL PDSDFKTALI SLAKISVDRN H
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