Gene Shewmr4_0058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0058 
Symbol 
ID4250937 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp67822 
End bp69066 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content49% 
IMG OID638116600 
Productmajor facilitator transporter 
Protein accessionYP_732196 
Protein GI113968403 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00890] Oxalate/Formate Antiporter 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000719685 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value7.8318e-08 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACTAAAG AGATGAACCG TACTCGGTAC CTGACCTTAG TTGGTACTAT TATCACCCAG 
TTTGCACTCG GCTCTGTTTA CACTTGGAGC CTGTTCAATG CGCAATTGGC TGCAAAGCTC
GATGAACCCG TTAGCCAAGT GGCATTTGTG TTTGGTTTAC TGAGTTTGTC TTTGGCCGTG
GCTTCTTCCA TGGCGGGTAA ATTACAGGAA CGCTTCGGCG TGCGTAATGT CACCTTAGGT
GCAGGTGTGT TACTCGGGTT GGGATTCTTA CTCACAGCCC AAGCCAGTAA CTTGATGATG
CTTTACCTGT GTGCCGGGAT TTTAGTGGGC TTTGCCGATG GCACTGGCTA CTTGATGACC
TTGTCTAACT GCGTGAAGTG GTTCCCCGAA CGCAAAGGGC TGATTTCGGC ATTAGCGATT
GGTGCTTATG GTCTAGGTAG TCTCGGATTC AAGTACATCA ACATGTTGTT ACTCGAAAAC
ACAGGCCTTG AAACTACCTT CCAACTGTGG GGCCTAATCG CCATGGCGCT AGTTTTGTGT
GGCGGCATGT TGATGAAAGA TGCGCCAGCA CAATCCGCCG CAAGTCAGCA AGCCGAAAGC
CGCGACTTCA CCCTCGCAGA AGCCATGAGT AAGCCACAAT ACTGGATGTT GGCGCTGATG
TTCCTATCGG CCTGTATGAG TGGTTTATAT GTGATTGGTG TGGCGAAAGA TATCGGCGAG
AAGATGGTCG ACTTGCCCGT ACTAGTCGCC GCCAATGCGG TTGCTGTCAT TGCGATGGCG
AACCTCTGTG GTCGCTTGGT GCTGGGTATT CTGTCGGACA AAATCCCTCG TATTCGGGTC
ATTTCGCTGG CGCAGATCAT CACCTTAGTC GGTATGGTGT TACTGTTGTT TGTACCTTTG
AATGCTAACT TGTTCTTCGT CGCGGTCGCC TGCGTTGCCT TTAGTTTTGG TGGCACTATT
ACTGTTTATC CCTCATTGGT GAGTGACTTC TTCGGCCTGA ATAACCTGAC TAAAAATTAT
GGTGTTATCT ACTTAGGTTT TGGTATAGGC AGCATTATAG GTTCGATTGT CGCCTCGTTA
TTCGGTGGCT TTATCGCGAC CTTCAACGTG ATTCTAGTGC TGCTGGTGGT GGCGTTAGTG
ATGTCATTAA CCATACGTTT GCCAGAACCT AAAACTCCAG CATCAGCCAA GAAAGCGACC
AAGAGCACAA CCCACTTAGT GAACATGGCG ACTGAATCGG CGTAA
 
Protein sequence
MTKEMNRTRY LTLVGTIITQ FALGSVYTWS LFNAQLAAKL DEPVSQVAFV FGLLSLSLAV 
ASSMAGKLQE RFGVRNVTLG AGVLLGLGFL LTAQASNLMM LYLCAGILVG FADGTGYLMT
LSNCVKWFPE RKGLISALAI GAYGLGSLGF KYINMLLLEN TGLETTFQLW GLIAMALVLC
GGMLMKDAPA QSAASQQAES RDFTLAEAMS KPQYWMLALM FLSACMSGLY VIGVAKDIGE
KMVDLPVLVA ANAVAVIAMA NLCGRLVLGI LSDKIPRIRV ISLAQIITLV GMVLLLFVPL
NANLFFVAVA CVAFSFGGTI TVYPSLVSDF FGLNNLTKNY GVIYLGFGIG SIIGSIVASL
FGGFIATFNV ILVLLVVALV MSLTIRLPEP KTPASAKKAT KSTTHLVNMA TESA