| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3790 |
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| Symbol | |
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| ID | 4480000 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 4553289 |
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| End bp | 4556450 |
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| Gene Length | 3162 bp |
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| Protein Length | 1053 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639728403 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_871414 |
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| Protein GI | 117922222 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAATA ACGAATTCGA CAAAGTAGAG CAACCCGCCA TCGCTCAGCT GCACCAGCTA
GGTTGGCATT ATATTCCCGG TAAAGCGCTG GCGCCGGAGC ACAGTAATCA AGAACGTGAT
TACTTGCGTG ATGTGGTATT GGTGAAGCGC TTAACGCAGG CGATTGAGCG GATTAATCCA
TGGATTAGTG AGGAGAACCT ACGCAAAGTG GTGCGCATGG TGACGCACCC GCAATGCGCT
GGTTTGATGG AGTATAACCA CGGTTTTTAT CAAACCATGG TGGGCTATCT CTCGGTCGAA
CAAGACCTTG GCAAGGGCAA GAAAGGCCAA ACGGTTAAGC TGATTGATTT TGATGATGTT
AGCAATAACG AATTTATCTG CACCAATCAG TTTAAGGTGG AAGGCACTAA GCAAACCATC
ATTCCTGACA TTGTCTGTTT TGTGAATGGC CTGCCGCTGG CGGTGATTGA GTGTAAATCG
CCGTTTATCT CTACGCCGGT TGTGTGTGGC ATTGACCAAC TGCGGCGCTA CGCTAATCAG
CGCCATCCTG AAGATTTTGA AGGCGCAGAA AAGCTGTTTT GGTATAACCA ACTGATGGTA
TCTACTAGCC GCGATATCGC CCGCGTGGGC ACCATTAGCT CGCCTGCACA GTATTACGCC
GATTGGAAAG ATGCTTATCC GCTGACTGAT GCGCAGATTG CCCAAGTCGA TAGCGATAAC
GTGGTGCCAT TAGCTAAAAA GTTAACGGTA GAGCAGCCTG TCGCCAGCGT TGACGCTGCG
GGTAGTGAGC TGCCACAAGT GGCTGAGCCA CCAGCAGATT ACCAAGTAGC AAAGGTAACC
GCGCAGCAAC GGCTACTGGC GGGGATGTTC AGCCGTGAGA ACTTTCTAGA TATCGTGCGT
AACTTCATTC TGTTTGAACC TGATGATGGC CGCTTAATTA AGAAAGTGGC GCGTTATCAG
CAGTTCCGCG CGGTGAATAA AGTGATTCAT CAATTAAAGA CCGGCAAAAC CCGCAAGGAT
AAGTCTGGCG TAGTATGGCA TACCCAAGGC AGTGGTAAGT CGCTGACGAT GGTGATGCTG
GCGGTAAAAA TGCGCCATGA CCTCGAGCTT AAGCAATACA AGCTGGTCTT TGTGACTGAC
AGAACTCAGT TAGATGAGCA GTTGTCTGCC ACCTTTCAAG GGGCCCAAGG CGAAACCGTG
TATAACGCGG ATTCGGTTGC CGCGCTGCGT GACCTGCTGA AAAAAGATAG CTCAGACTTG
GTGACTGCCA TGGTGCAGAA GTTCCAAGAC GCAGAGAAAG AGGCGCAGCA ACAGGGCGAC
AAGAGCTTTG TTAACATCAA TACCTCCGAC AAGATTATTG TGCTGGCGGA CGAGGCGCAC
CGTACTCAGT TTGGTGGCTT AGCGACGACC ATTAACGCCG CTTTGCCGAA CGCGCCCAAA
ATCGGTTTTA CCGGCACACC ATTGTTGAAA ACCCAAAAGA TGGATACCGC CTTTGGTGGC
TACATTGATA AATATAAAAT CAATGAGGCC GTTGAGGACG GCGCAACGGT AAGGCTGTTG
TATGAAGGTC GTGAGGTAAA AACCGCTGTG GCGGGCGAAT CGCTTGATGC CTTGTTTGAA
GAGTATTTTG GCGATTACAC CAAAGAAGAA CAGCAAGAGA TTAAACGTAA ATACGGCGTT
GAAAAGGCGG TACGAGAAGC GCCAGCGCGC ATTCGTTGGG TCTGTATCGA CCTGTTAAAA
CATTACCGTG AGCGCATTCG GCCTGATGGA TTTAAGGCGA TGATCGTCGT TGGCAGTCGC
CACGCGGCAA CCCTCTTCAA AAAGACCTTA GACGAGTTAA AGGCGCCGCC ATCAGAGGTG
ATTATCTCCG GTGATCATAA TGACCCGCAG TACATTGCCC AATACACCGA TAAGGTTCAC
CAGAAGAAGG TTATCGCTAA CTTTAAGAAG CCGTTTGGTA TAGATTCACC GGGCACAGAT
GAGAAACAGC GCAAGTTTGA TAATACCGCC TTTTTGATCG TGAAAGACAT GCTGCTCACC
GGCTTTGATG CGCCGATTGC GCAGGTGATG TATATCGACC GTAAGCTACA AGACCATACT
TTGATGCAGG CCATTGCGCG GGTAAACCGA AACTACAAAG GCAAAGAGTG CGGTTATGTG
GTGGACTACT ACGGTTTAAC CAGTTATCTC ACCGATGCAT TAGAGCTGTT TAGTAGCGAT
GATGTCGAAG GCACCTACCA AAGCCTTAAA GATGAGTTGC CTAAACTGCA AGCTGCGCAT
ACGCGGCTTA AGGCGTTTTT CAAAGGCGTG ACCAGTGATG ACGTTGATGA TTATGTTGTC
GTCCTGAAAG ACGATGCTTT CCGGGCGCAG TTTGAAGTGG CTTACAAGCG TTTTGCTAAG
CAATTGAACG TGATTCTGCC TGATGCTTCA GCTAAGCCTT ATATCCCGGA TATGACCTTC
TTTGGCAAGG TGCATCATGC GGCGCGCAAT CGTTATCGTG ACGATGGTAT GGATTTGCTG
GATGTGGGCG AGAAGGTGCG CCAGCTGGTG GACGAGCACA TTTTGAGTAC CGGCGTAGAC
CCGAAAATTC CACCGGTAGA TTTACTGGCC GCTAACTTTA AAGAGCATGT GCAAAAGATT
AAATCGCCTG AGTCAAAGGC CTCAGAAATT GAGAGTGCGC TTAAGCATCA CATCAATATC
AATTTAGAGG ATGACCCCGA GTATTACCGT TCGTTGAGCT TGCGCTTACG CGATATTATT
GAGAAGACGG CGGGTAACTG GGAGCGCCAG CTAGAGCTGT TGCTGGAAAT GACCAATGAC
TTGAGCACTG CACATAAGCA AGCGGCGCAA AATGTTGGCC TGAGTGAAAC CGAGTTCGCC
TTTTACAATA TTCTGTTGGC TGAAGTCACT CGTATCCATG ACGGCGATAT GATTGATGAA
GCATTGCATG AGCAAATTAA GTCAACGACA CAGGCGTTAG TACAAGTATT GGATGAAGCG
ACGCGGATCG TCGATTTCTT CAATAAAGAA GACGAAATCA AACGGATGAA GAAAAAGATT
AAGCGAGTGA TATTAGATCA GCCTTTTGGA GATAAAGCGT TGGTAGCAAC TCTGCAAGAC
CGCTTTGTTG AACTGGCTAA GCACAAGTTT GGCAACAAGT GA
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| Protein sequence | MSNNEFDKVE QPAIAQLHQL GWHYIPGKAL APEHSNQERD YLRDVVLVKR LTQAIERINP
WISEENLRKV VRMVTHPQCA GLMEYNHGFY QTMVGYLSVE QDLGKGKKGQ TVKLIDFDDV
SNNEFICTNQ FKVEGTKQTI IPDIVCFVNG LPLAVIECKS PFISTPVVCG IDQLRRYANQ
RHPEDFEGAE KLFWYNQLMV STSRDIARVG TISSPAQYYA DWKDAYPLTD AQIAQVDSDN
VVPLAKKLTV EQPVASVDAA GSELPQVAEP PADYQVAKVT AQQRLLAGMF SRENFLDIVR
NFILFEPDDG RLIKKVARYQ QFRAVNKVIH QLKTGKTRKD KSGVVWHTQG SGKSLTMVML
AVKMRHDLEL KQYKLVFVTD RTQLDEQLSA TFQGAQGETV YNADSVAALR DLLKKDSSDL
VTAMVQKFQD AEKEAQQQGD KSFVNINTSD KIIVLADEAH RTQFGGLATT INAALPNAPK
IGFTGTPLLK TQKMDTAFGG YIDKYKINEA VEDGATVRLL YEGREVKTAV AGESLDALFE
EYFGDYTKEE QQEIKRKYGV EKAVREAPAR IRWVCIDLLK HYRERIRPDG FKAMIVVGSR
HAATLFKKTL DELKAPPSEV IISGDHNDPQ YIAQYTDKVH QKKVIANFKK PFGIDSPGTD
EKQRKFDNTA FLIVKDMLLT GFDAPIAQVM YIDRKLQDHT LMQAIARVNR NYKGKECGYV
VDYYGLTSYL TDALELFSSD DVEGTYQSLK DELPKLQAAH TRLKAFFKGV TSDDVDDYVV
VLKDDAFRAQ FEVAYKRFAK QLNVILPDAS AKPYIPDMTF FGKVHHAARN RYRDDGMDLL
DVGEKVRQLV DEHILSTGVD PKIPPVDLLA ANFKEHVQKI KSPESKASEI ESALKHHINI
NLEDDPEYYR SLSLRLRDII EKTAGNWERQ LELLLEMTND LSTAHKQAAQ NVGLSETEFA
FYNILLAEVT RIHDGDMIDE ALHEQIKSTT QALVQVLDEA TRIVDFFNKE DEIKRMKKKI
KRVILDQPFG DKALVATLQD RFVELAKHKF GNK
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