| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3419 |
|---|
| Symbol | |
|---|
| ID | 4476762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4089662 |
|---|
| End bp | 4094965 |
|---|
| Gene Length | 5304 bp |
|---|
| Protein Length | 1767 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639728028 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_871048 |
|---|
| Protein GI | 117921856 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA GTAAACTTCG TACCTTCCGC AGCAAAATTC TATCCCATAT TGCGCTGCCT
TTAATTCTTA TCATGACGGC CGTTTACGGC ATTAATGCTT GGTTTAATTA TCTTTCTGCC
GAGCGAAAGC TATACGATTC CTTAGCCCAG GAGTCGAATC ATTCCGCCTA TCGCCTACAG
TTGCTAATCG AACATGCGCA GGCCAATACG CAAGGTGTTG CCGATTTTAT TGGGTTTATC
TCCAATAAGG AGGGCATTAA TGATAGTGAG AAAATCAAAC GGGTACTCAC TAATCGCATC
GAACGCAATC CCGATTTTTA TGGCTCAGCC GTTGCGTTTA AACCTTATAC CTTCCCCGAT
AAAAAACTCT TTTCCCCCTA TGTTTACCGC GATGGCAACA ACTTCCATTA TCTAGATATT
GGCGCCGAGG GTTATGACTA TACCGATGGC TCCTGGGATT GGTGGTCAAA GGCCATTAAT
CAACCCGGAG GCTATTGGTC TAAGGCTTAT TTTGATGAGG GCGCGGGAAA CACTTTGATG
GTGACTTATT CGGTGCCTTT TGGCCCTGAA AATGATTACT TTGGGGTGGC GACCGTCGAT
TTGGCGCTCG ATAAATTGCC TGAACAACTT GGTGTGCAGC CAAGCCAATT AGTGGTACTC
GATGATCAAG GGCGGCTGAT CTTCCACAGC GATAAAGAGA AAGTGCTCGC CGTGACCTCC
GCCGAATGGC TCGATAGAAA TACCCGTCGA AACAGTGACT TTTGGACATT ATTAGATAAG
GGGTTAAACG GACAGGCGCG CTTTATCGAT GATAAGAGCA CTGTGTATCT CGCCAGTGTT
GCCTCAGTCG CTAAGCTCAA ATGGCGCGTC ATTGTCATGG TGCCCGAACA TCAGCTGTTT
GCAACGCTGC TGGATGATGT GGCGTCCGTG GTGCTTAACC TTAGTTTATT AACTCTATTG
TTATTACTCA CTTGCTACAT CGCCGCTAAA CGTTTGACTC GGCCGCTTGA GGCGCTGGAG
TCGGGCATTT TGGCCTTCGG TCAGGGTAAA GCCCAGCAAT TAGCGATCCC CAAAGGTGCG
GTGAGTGAGA TAGTCACCTT AAGCAGCACC TTTAACCAGA TGGCGGAACT CCTCGGCGAG
CGTGAACAGG CGATTTTAGA CTCCCGCGGT AACCGTTTCG CGCGGCTGAT CGATGGCATG
AGTGATAAGT CCTTCTATTG CTCGCTCGAC CCTTCAGGGC AGCTGGCGCA GGTGAGTGAG
GGCGTCACTA AGGTCTTGGG CATGTCACCT GAGCTACTCA AACGTAAGTA TCAAAGACTG
TTTACCGCCA ATCCATTAAA TGAAAAAAAC TGGGAATACA CGGATTTAGC CCTGAAGGGG
GAGAACGTTC CTTCCCATCA AGTCGAGCTG CTCGACGCGA GTGGCCACCC ACGTATGCTC
GACCTCTTTA TGCTGCCCTT GGTTTCGGAT ACGGGCGAGC TGATGTCGGT GGAGATGTTA
TTCACCGATG TGACCGAACA GTTCTCCGCT GCCACTTGGT CTAATGCCGT ACTCGAAGCG
GCGCCAGAGG CGATGCTGAT CGTCGAGCAG ATGGGCTCAA TTGTATTCAC TAATACCCGC
TGCCAAATTC TCTTTGGTTA CGATGCCAAC AGCATGTTAG GGCTACAGGT GGAGTCACTC
TTGCCTGAAG CCATGCGCAG CAACCATGCC CGCGACCGCC TGCAATTTTT GCGTGAAGGC
CGCGATCGCC CCATGGCCAA TGCGCGCCAT GTGCGGGCGC TTAAAGCCGA TGGCGGGGAG
TTTGTCGCCG AAATCGCCTT GAGTATTTTA CCTGCCGATC ATGAAGGTCG CAGACAAGTG
GCGGCATCGA TTCGGGATAT GACCCAGAAA TTAGCCGTAG AGCAAAAAAT CCGTGACAGT
GAACTAAGGT TCCGCGGCCT AGTGACCAAT ATTCCTGGCG CCGTCTATCG TACGCGCATC
GGCGATGTCT GGGTGATGGA ATATGTCAGT GACAACATTG CCGATATTAC GGGGTTTGCG
GCGAGCCAGT TTATTGAAAA CCGTCAACGC ACCTTTGCCT CGCTGATCTT GGAAGAAGAT
CGTGAGCTAT GCCATCAACA TATCGATAGG GCGCTGGCGC AGCAGGAAAC CTTTGAGGTG
GAATACCGTA TTCGCCACCG TGACGGCAGC ATTCGCTGGG TGCATGAAAA GGGCAAGGCG
AGTTATACCG AAGAAGGATT CCCACTGTGG TTTGACGGCA GTATTGACGA TATCACCGAG
AGCAAACTGG CCATGGTTGA GCTTGAGGCG TCGCGCCTGC AACTCACCAA TATTACCGAA
TCTATCCCTT GTACTGTGTA TCAGTTGCGC TGGGTTTCTC CTGCGGATCA TACCTTTACT
TTCCTCTCCG GCGCGGCATT CCATATGCTG GGCTTACACC GCGAAGATTT ACTGAAAGAC
TTTAATATCA TTGCCGAGCG GATTTTTGAT GAGGAACGCC CCGAGGTGGT GCGTGCCTTA
GCGGGTAAGA GTGAGGACAA GTTGCAATGG GTGCGTGAGT TCCGTTATCG CCATCCTAAC
GGCAGTATTC GCTGGATGGA GGCGGGAGCG AGCGGTCACT ACAACGATGA TGGCGCCATT
ATTTGGAATG GCTACGTGAT GGATATTACC GAGCGTAAAG CCATTGAAGA AGAGTTGGCA
GTTAGCGAGG CGCACTTTAA GGCGCTATTT GATGGCTCGA CCATTGGCAT TGTGAACGTC
GATGCCAAAG GCGTGATCCT CGACTGTAAC GACCAATATT GCGAAGACAT GGGCCAGACC
CGTGAGTCAC TCTGCGGTGT GCCAATTTTC GATGTCTTGA GCCTGCAGGA TAAAGAAACC
GCTAAGGCTC AGTTTAGAGA ATTGGCCGAA GGTAAAGTCG ACCACTATCG CGGTGAACGT
AGCTTTATTC GCCCCAATGG TGAGCCACTG TGGATGACGG TCAATGTGTC GGCACTGTTT
GATAGCCAGA AGCAGTTCGA ATCGGCCGTG GTCAGTATGG TCGATATGAC AGAGCTGAAA
CTCTTATCTG ACGAACTGTT AGTGGCGAAA GAGGAGGCGG ATGCGGCGAG TAAGGCTAAG
GGCGATTTCC TCGCGAATAT GTCCCATGAA ATCCGCACGC CGATGAATGC CATTATCGGT
ATGTCGCAAC TTTGTTTGCA GACAGCGCTG GATAAGAAGC AGAAGAACTA TGTGGAGAAA
ATTGAGCGCG CCTCAAAATC CTTACTCTCC ATCATTAACG ACATCCTCGA CTTCTCTAAA
ATTGAAGCCG GCAAGTTAGA TATCGAATCT GTGCCCTTCC AGCTCGATAC TATGCTCGAA
GATCTCAGCG ATATGTTCTC CGAGAAGGCG GCCCATAAAC AGCTTGAACT GCTGTTTGCG
GTGGCGCCCA ATGTGCCTAG GCACTTATTT GGTGACTCGC TGCGTTTAGG GCAAGTGCTG
ATCAACTTGA TGAACAACGC GATTAAGTTT ACCGAGCGCG GTGAAGTCTT GTTATCGCTC
AACTTGGTTG AGCAGCAAAA TGACGATGTG GTGCTGCGCT TTAGTGTGCG CGACAGCGGT
ATTGGTTTAA CCGCAGATCA GCAGGCCAAA CTGTTTAAAT CCTTCAGTCA GGCCGATACC
TCTACAACAC GCAAGTACGG CGGTACGGGC TTAGGGTTGG CGATTTGTAA ACAGCTCGTC
GAACTGATGG GCGGCACCAT TGGGGTTGAA AGTCAGTTCG GCCACGGCAG TACCTTCTAT
TTTACCGTTA AGTTGCAGAT TTCCAGCGGT CAAAAGCTAA CGGTCGCCCA AGAGCTTGAA
GGCATGCCGA TTCTGGTTGC CGATGACAAT GCCACCGCCC GCGACATTAT GCGCACCACC
TTAGAAAGCA TGGGCTTTAG GGTGGATACT GTGCGCTCCG GCGAAGAGGC TGTGACCCGC
TGTATTCAGC AGGAATATGC CGTTGCCTTA ATCGACTGGA AGATGCCGAA CCTCGATGGC
ATAGAAACGG CTAAACAAAT CAAGCAACAG GCGAAGAAGG CACCGCGGAT CTTGATGGTG
TCGGCCCATG CAAACCAAGA CTTCTTAAGC CAAATTGAAG AACTTGGCTT GGCCGGATAT
ATCAGTAAAC CCATTAGTGC ATCTAGGTTG CTCGACGGCA TTATAAATTC CCTCGGTCGG
GCGGGAGTTC TCCCCGTGAG ACGCCAGAGC GAGAGCATCG ATCCTAAACT GTTATTGCCG
CTTAAGGGTA AGCGCATCCT CTTGGTTGAA GACAATGAGA TGAACCTTGA GGTGGCCACC
GAGTTTTTAG AGCAGGTGGG GATTATCTTA TCCATTGCCA CTAACGGCCA GATAGCGCTC
GATAAGCTGG AGCAGCAGAG CTTCGATCTG GTGTTGATGG ACTGCCAAAT GCCAGTGATG
GACGGTTATC AGGCCACGCA GGCTCTTAGA AAGCGGCCCG AACTCACCGA GCTGCCCGTG
GTCGCGATGA CAGCAAATGC GATGGCTGGC GATAAGGAAA TGTGTTTAAG AGCGGGGATG
AACGACCATA TCGCTAAGCC GATTGAGGTC AACCTACTGT ATCAAACCCT GTTGAAATAC
TTAGGTGGCA GCGCGTCGCT GGTCGATAAC ACAGAACCGA GTCAACTGGT TGATATTCCA
GTTAAACCGA TCAACTTAGA TTCTGAATCT GTGGTGAAAT GGCCCGAGCA TCCTGAGCTG
GATATCGATA GGGGCTTACA ATTAGTTCAA AACTCTACCC GTTTGTATCA AAGGAGCTTC
GATCGTTTCG TTACCAGTCA GCGTAATGTG GTGGATCTCA TCAATAAAGC GCTCGCCAAT
GACAAACGTG ACGATGCCGT GCGGATGGCG CATACCTTGA AGGGGCTCGC GGGTAACTTA
AGCTCTAGCA AGCTGGTGGA ATTAGCCCGC CAACTAGAGT TGCACTTAAG TGAGAAGAGC
GAATACCAAA CTGAGTTAGA CCAAATCCAA GCGCTAGTGG CGTCGATTTG TGATGCCATT
GAGCGGGTCA AGCCGCAGTT TGAGGAGTCG ACTACATCGA CGAGCGAACA ACTCTCGCCA
GAGGCGCTAG TCACCGCCTT AAAACAGCTG CGACAAAGCC TAGAGGATGC TGACTCAGAT
GCGGTGGCGC AAATCGATGC GTTAAAACCT CAGGTGAGTA GCAAGTTATG GCTGCAGCTC
AGCCCAGCCC TGACTATGAT TAATCAGTAT CAGTTTGATG AAGCAGTGGA TTTGATTGAT
GAAGTGCTTG CGGAATTAAC CTAA
|
|---|
| Protein sequence | MDKSKLRTFR SKILSHIALP LILIMTAVYG INAWFNYLSA ERKLYDSLAQ ESNHSAYRLQ
LLIEHAQANT QGVADFIGFI SNKEGINDSE KIKRVLTNRI ERNPDFYGSA VAFKPYTFPD
KKLFSPYVYR DGNNFHYLDI GAEGYDYTDG SWDWWSKAIN QPGGYWSKAY FDEGAGNTLM
VTYSVPFGPE NDYFGVATVD LALDKLPEQL GVQPSQLVVL DDQGRLIFHS DKEKVLAVTS
AEWLDRNTRR NSDFWTLLDK GLNGQARFID DKSTVYLASV ASVAKLKWRV IVMVPEHQLF
ATLLDDVASV VLNLSLLTLL LLLTCYIAAK RLTRPLEALE SGILAFGQGK AQQLAIPKGA
VSEIVTLSST FNQMAELLGE REQAILDSRG NRFARLIDGM SDKSFYCSLD PSGQLAQVSE
GVTKVLGMSP ELLKRKYQRL FTANPLNEKN WEYTDLALKG ENVPSHQVEL LDASGHPRML
DLFMLPLVSD TGELMSVEML FTDVTEQFSA ATWSNAVLEA APEAMLIVEQ MGSIVFTNTR
CQILFGYDAN SMLGLQVESL LPEAMRSNHA RDRLQFLREG RDRPMANARH VRALKADGGE
FVAEIALSIL PADHEGRRQV AASIRDMTQK LAVEQKIRDS ELRFRGLVTN IPGAVYRTRI
GDVWVMEYVS DNIADITGFA ASQFIENRQR TFASLILEED RELCHQHIDR ALAQQETFEV
EYRIRHRDGS IRWVHEKGKA SYTEEGFPLW FDGSIDDITE SKLAMVELEA SRLQLTNITE
SIPCTVYQLR WVSPADHTFT FLSGAAFHML GLHREDLLKD FNIIAERIFD EERPEVVRAL
AGKSEDKLQW VREFRYRHPN GSIRWMEAGA SGHYNDDGAI IWNGYVMDIT ERKAIEEELA
VSEAHFKALF DGSTIGIVNV DAKGVILDCN DQYCEDMGQT RESLCGVPIF DVLSLQDKET
AKAQFRELAE GKVDHYRGER SFIRPNGEPL WMTVNVSALF DSQKQFESAV VSMVDMTELK
LLSDELLVAK EEADAASKAK GDFLANMSHE IRTPMNAIIG MSQLCLQTAL DKKQKNYVEK
IERASKSLLS IINDILDFSK IEAGKLDIES VPFQLDTMLE DLSDMFSEKA AHKQLELLFA
VAPNVPRHLF GDSLRLGQVL INLMNNAIKF TERGEVLLSL NLVEQQNDDV VLRFSVRDSG
IGLTADQQAK LFKSFSQADT STTRKYGGTG LGLAICKQLV ELMGGTIGVE SQFGHGSTFY
FTVKLQISSG QKLTVAQELE GMPILVADDN ATARDIMRTT LESMGFRVDT VRSGEEAVTR
CIQQEYAVAL IDWKMPNLDG IETAKQIKQQ AKKAPRILMV SAHANQDFLS QIEELGLAGY
ISKPISASRL LDGIINSLGR AGVLPVRRQS ESIDPKLLLP LKGKRILLVE DNEMNLEVAT
EFLEQVGIIL SIATNGQIAL DKLEQQSFDL VLMDCQMPVM DGYQATQALR KRPELTELPV
VAMTANAMAG DKEMCLRAGM NDHIAKPIEV NLLYQTLLKY LGGSASLVDN TEPSQLVDIP
VKPINLDSES VVKWPEHPEL DIDRGLQLVQ NSTRLYQRSF DRFVTSQRNV VDLINKALAN
DKRDDAVRMA HTLKGLAGNL SSSKLVELAR QLELHLSEKS EYQTELDQIQ ALVASICDAI
ERVKPQFEES TTSTSEQLSP EALVTALKQL RQSLEDADSD AVAQIDALKP QVSSKLWLQL
SPALTMINQY QFDEAVDLID EVLAELT
|
|---|
| |