| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3231 |
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| Symbol | |
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| ID | 4921555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3856235 |
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| End bp | 3857905 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164841 |
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| Product | hypothetical protein |
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| Protein accession | YP_001095356 |
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| Protein GI | 127514159 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1315] Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGATC CTGGACTGAT AGAACTGAGT AGTGACGGAA ACTTAGCCGA ATTAAAAGTC
ATTCCCAATA CCCATGGCCC ACTGACGGTG GATGCCATTC TCGAACTGCT CACCCTCCCC
GAATTTTGCC AGCTTTTCCC CCGTAAGAAT GTTATCGAAA AGGCCGTCGC CCAGGTCAAC
AAGGTCATCG GCCAGGACGA TGGTCAGTAT GAACTCTTCT TCGAGATCGC CGAGCGCCGC
GACGCCGAAA TAGCCATCAC CCTCAGCGAC GACAAGATGA GCGCCGAGAT GACGCTCACC
GCCCCCTGGG GGGGCAAGTC ACTGACACTG CAAGATATCT TAAGGGCCCT CAAGGCCGAG
CAGATCAGCA TGGGGCTGAG CAAGGTCAAG ATAGAGGCTC TGCTGGCCAA GCTGCCGACC
CTGGCCCCCG GCGAGAGTTG CAGCGAGGTG TTCGCCCACG GCAAGCCCGC CATCAATGGC
ACCAACGCCA TCGTCGAGCG CAAGGTGCCG CTGGCGAGGG AGCGTCTGCT GCAACCCCAG
GAGCGCGCCG ACGGCACGGT GGACATGCGT AACCTGGGCG AGATCATCAT GGTCAAACCC
AACGACAAGT TGATGGTTAA GATCCCCGCC ACCGAAGGCA CTAAGGGCTA CAACGTTCAG
GGTGAGCCGC TACTGCCGAT CGCAGGCAAA GATCTTAAAC TCACCGCGGG CACGGGCGCC
GAACTACTGG AGTCCGACCC CAATGTGTTA GTCGCCACGG TCGCCGGCCA GCCGGTGGAG
ACCAAGACAG GCATGCAGGT CGATGACGTG CTGCAGATAA AGGATGTGGA TATCGGCTAC
GGCAACGTCG ACTTCAAGGG CAGTGTCTTG GTTACGGGCG ACGTGCATGA AGGCATGGTG
GTCAAGTCCA CCGGTGATAT TACCGTGATG GGCTTCGTCG ACTCGGCCCA GCTGATCGCC
GACGGTGACA TCACCGTCAG CAAAGGGGTG ATCGGCCGCC AGCTCAAGGA AGATCAACTC
TCCACCAAGC TATCTGCCAA GGGGCAGATC TCCGCCCAGT TCGTACAATA CTCTGAGCTG
CAGGCCGAAG GCGACATCCT GGTCACCAAG CAGCTGCTGC ACAGCCACAC CCAGACAGCA
GGGAAACTGA TCGTCAGCGA TGCCAACGGC CGCCGCGGCG ACCTGGTGGG CGGCGTGGCC
CAGGCCGATA AGGGGGTCAA GGCGGTGATC ATTGGCGCCA CGGCCGGTAC CCGCACCGAG
GTGTTCTGTG CCATGAAGTG CGGCGAGCTG AAAGAGGAGC TCAAGCAGCT GGATCACGGG
ATAAAACACA TGGTGGTGGC CAAGCTCAAT ATCGAGGCCA GCCTCAACAA GCTGCCCCCC
AAGGCCGAAT GGCAGGACGA CGCCCTCATG GTCGAGCAGG TCAAGGGGAT GCTGGAAGAG
AAGCGCCGCA TCACCGAGGA GTGGTCCCGG GAGGAGCAGG AGTTCAACGC CATCAAACAG
GAAGTGGAAA ACTATTATCA GGAGTACCGC ATCGAGGCCT GCAAGCATAT CTTCGCCAAC
GTCGAGCTGC ATATCGGCCC GGCCTTTAAC CGCACCCAGC GCGAACACGG CCCCTGCATA
GTGGTCAACG AAGGCCAAGA GATCAGCTTC GACTACAGCA ATCGTAAGTG A
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| Protein sequence | MLDPGLIELS SDGNLAELKV IPNTHGPLTV DAILELLTLP EFCQLFPRKN VIEKAVAQVN
KVIGQDDGQY ELFFEIAERR DAEIAITLSD DKMSAEMTLT APWGGKSLTL QDILRALKAE
QISMGLSKVK IEALLAKLPT LAPGESCSEV FAHGKPAING TNAIVERKVP LARERLLQPQ
ERADGTVDMR NLGEIIMVKP NDKLMVKIPA TEGTKGYNVQ GEPLLPIAGK DLKLTAGTGA
ELLESDPNVL VATVAGQPVE TKTGMQVDDV LQIKDVDIGY GNVDFKGSVL VTGDVHEGMV
VKSTGDITVM GFVDSAQLIA DGDITVSKGV IGRQLKEDQL STKLSAKGQI SAQFVQYSEL
QAEGDILVTK QLLHSHTQTA GKLIVSDANG RRGDLVGGVA QADKGVKAVI IGATAGTRTE
VFCAMKCGEL KEELKQLDHG IKHMVVAKLN IEASLNKLPP KAEWQDDALM VEQVKGMLEE
KRRITEEWSR EEQEFNAIKQ EVENYYQEYR IEACKHIFAN VELHIGPAFN RTQREHGPCI
VVNEGQEISF DYSNRK
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