Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2927 |
Symbol | lnt |
ID | 4922129 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3465545 |
End bp | 3467158 |
Gene Length | 1614 bp |
Protein Length | 537 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640164532 |
Product | apolipoprotein N-acyltransferase |
Protein accession | YP_001095052 |
Protein GI | 127513855 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0815] Apolipoprotein N-acyltransferase |
TIGRFAM ID | [TIGR00546] apolipoprotein N-acyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.974187 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00828182 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCTGCTAC GACTTAGGGC AATTGCCCAT CATCCTGTAA TACGGCTGGT ACTCGCCTAT CTGGCGGGTG CCAGTACCGC TCTGGCCTTT GCCCCCTATG CACTTTGGCC CATCTATCCG CTGGCCATGG CGTTCGCCCT CTGGCACAGC CGCCGGCTTA CCCCGAAGCA GACATTTCTC TACTGGCTAA GCTTTGGCTT TGGCAGTTTC TCTGTGGGGA TCAGCTGGGT GCATGTCAGC ATAGACACCT ACGGTGGCCT GCCGCTTATC GCCTCACTGG GCCTGATGGC CATCCTGGCC CTCTACCTGG CGCTCTACCC GGCGCTGGCG GCCTACCTCA GCATCAAGCT GGTGCCTAAG TCGCTCACAC TGCGCTTTCT AGCCGTCTTC CCTGCCGCTT GGGTGCTGAC CGAGTGGGCC AGAGGTTGGG TGCTGACCGG CTTTCCTTGG CTTTGGGGCG GCTATAGCCA AACCAATGGA CCACTGGCGC CCCTTGCCAG CAACATAGGC GCCCTGGGTC TCAGCCTGGT ACTAGCCATG ATCGCCGGCG CCTTAGCCCT TGCCTTTACC CATAGTGCTG AAGGGCAAGG CTCAAATGGG GTGAGCTCAA ATGGGGTAAG CTCAAATCGG CCGCGCTCAT TGAGCTTGCA AGCAGCACCG CTGCTGATTA TCACCTCCCT TGCCGGCCTG GGGTCATTTG CCAGCGCGCA ACTATCGCCC ATTACCCCGA CGGGCAAGTC GGTCAAGGTG GCGCTGGTCC AGGGCAACAT CGCCCAGAGC ATGAAATGGC AGCCCGAGGC GCTCTGGCCA ACCATGATTA AGTATATGGA TCTCTCAAGG CAGTCACTGG CCGACACAGA TCTGTTTATC TGGCCGGAGG CGGCGATCCC CGCCCCCGAG TATATGGTGG AAGAGTTTCT CGACAACGCC AACAAGGTCG CCAACCTGAA TAACAGCGCC ATCATCACGG GCATCATCAG CAAGCAGCAG AATCGCTTCT ATAACTCGCT GATCGTCCTG GGTAACCACC AGCAGCTACA ACAAGAGAGC GCCGATTATC GCGGCGATGG CAGCAACGAG TTTCGTAAGC ACCACCTGCT GCCCATCGGC GAGTTTGTGC CGCTGGAAGA TCTATTAAGG CCGCTGGCGC CCTTTTTTAA CCTGCCCATG TCCTCCTTCG CCAGAGGCGA CTTCCAGCAG CCTAACCTGG ACGCCGTGGG GCATCAGCTG GCGCCGGCCA TCTGTTATGA AATCGCCTTC CCCGAGCAAC TCAGGGCTAA TGTGAATGCC GGAACAGAGC TGCTGCTCAC CGTCTCCAAC GATGCCTGGT TCGGCCGCTC AAATGGGCCG TTGCAGCACA TGGAGATCGC CCAGATGCGC GCCATCGAAC TGGGCAGGCC GCTACTAAGA GCCACCAACA ATGGTATCAC CGCCGTGGTC GACTCACAGG GCAAGATCAC CCACAGCCTG CCGCAGTTTG AAACCGGAGT GCTCAAGGCC GAGGTGCCGC TGGTGTCCGG CAGCACAGGC TTCGCCCGCT GGGGCCAGAC GCCACTCCTG CTGCTGTGCA CCATCATCTT AATCGGCGCC GTGATCCGCA GACTAAGGCT CTAG
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Protein sequence | MLLRLRAIAH HPVIRLVLAY LAGASTALAF APYALWPIYP LAMAFALWHS RRLTPKQTFL YWLSFGFGSF SVGISWVHVS IDTYGGLPLI ASLGLMAILA LYLALYPALA AYLSIKLVPK SLTLRFLAVF PAAWVLTEWA RGWVLTGFPW LWGGYSQTNG PLAPLASNIG ALGLSLVLAM IAGALALAFT HSAEGQGSNG VSSNGVSSNR PRSLSLQAAP LLIITSLAGL GSFASAQLSP ITPTGKSVKV ALVQGNIAQS MKWQPEALWP TMIKYMDLSR QSLADTDLFI WPEAAIPAPE YMVEEFLDNA NKVANLNNSA IITGIISKQQ NRFYNSLIVL GNHQQLQQES ADYRGDGSNE FRKHHLLPIG EFVPLEDLLR PLAPFFNLPM SSFARGDFQQ PNLDAVGHQL APAICYEIAF PEQLRANVNA GTELLLTVSN DAWFGRSNGP LQHMEIAQMR AIELGRPLLR ATNNGITAVV DSQGKITHSL PQFETGVLKA EVPLVSGSTG FARWGQTPLL LLCTIILIGA VIRRLRL
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