Gene Shew_2927 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2927 
Symbollnt 
ID4922129 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3465545 
End bp3467158 
Gene Length1614 bp 
Protein Length537 aa 
Translation table11 
GC content60% 
IMG OID640164532 
Productapolipoprotein N-acyltransferase 
Protein accessionYP_001095052 
Protein GI127513855 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0815] Apolipoprotein N-acyltransferase 
TIGRFAM ID[TIGR00546] apolipoprotein N-acyltransferase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.974187 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00828182 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCTGCTAC GACTTAGGGC AATTGCCCAT CATCCTGTAA TACGGCTGGT ACTCGCCTAT 
CTGGCGGGTG CCAGTACCGC TCTGGCCTTT GCCCCCTATG CACTTTGGCC CATCTATCCG
CTGGCCATGG CGTTCGCCCT CTGGCACAGC CGCCGGCTTA CCCCGAAGCA GACATTTCTC
TACTGGCTAA GCTTTGGCTT TGGCAGTTTC TCTGTGGGGA TCAGCTGGGT GCATGTCAGC
ATAGACACCT ACGGTGGCCT GCCGCTTATC GCCTCACTGG GCCTGATGGC CATCCTGGCC
CTCTACCTGG CGCTCTACCC GGCGCTGGCG GCCTACCTCA GCATCAAGCT GGTGCCTAAG
TCGCTCACAC TGCGCTTTCT AGCCGTCTTC CCTGCCGCTT GGGTGCTGAC CGAGTGGGCC
AGAGGTTGGG TGCTGACCGG CTTTCCTTGG CTTTGGGGCG GCTATAGCCA AACCAATGGA
CCACTGGCGC CCCTTGCCAG CAACATAGGC GCCCTGGGTC TCAGCCTGGT ACTAGCCATG
ATCGCCGGCG CCTTAGCCCT TGCCTTTACC CATAGTGCTG AAGGGCAAGG CTCAAATGGG
GTGAGCTCAA ATGGGGTAAG CTCAAATCGG CCGCGCTCAT TGAGCTTGCA AGCAGCACCG
CTGCTGATTA TCACCTCCCT TGCCGGCCTG GGGTCATTTG CCAGCGCGCA ACTATCGCCC
ATTACCCCGA CGGGCAAGTC GGTCAAGGTG GCGCTGGTCC AGGGCAACAT CGCCCAGAGC
ATGAAATGGC AGCCCGAGGC GCTCTGGCCA ACCATGATTA AGTATATGGA TCTCTCAAGG
CAGTCACTGG CCGACACAGA TCTGTTTATC TGGCCGGAGG CGGCGATCCC CGCCCCCGAG
TATATGGTGG AAGAGTTTCT CGACAACGCC AACAAGGTCG CCAACCTGAA TAACAGCGCC
ATCATCACGG GCATCATCAG CAAGCAGCAG AATCGCTTCT ATAACTCGCT GATCGTCCTG
GGTAACCACC AGCAGCTACA ACAAGAGAGC GCCGATTATC GCGGCGATGG CAGCAACGAG
TTTCGTAAGC ACCACCTGCT GCCCATCGGC GAGTTTGTGC CGCTGGAAGA TCTATTAAGG
CCGCTGGCGC CCTTTTTTAA CCTGCCCATG TCCTCCTTCG CCAGAGGCGA CTTCCAGCAG
CCTAACCTGG ACGCCGTGGG GCATCAGCTG GCGCCGGCCA TCTGTTATGA AATCGCCTTC
CCCGAGCAAC TCAGGGCTAA TGTGAATGCC GGAACAGAGC TGCTGCTCAC CGTCTCCAAC
GATGCCTGGT TCGGCCGCTC AAATGGGCCG TTGCAGCACA TGGAGATCGC CCAGATGCGC
GCCATCGAAC TGGGCAGGCC GCTACTAAGA GCCACCAACA ATGGTATCAC CGCCGTGGTC
GACTCACAGG GCAAGATCAC CCACAGCCTG CCGCAGTTTG AAACCGGAGT GCTCAAGGCC
GAGGTGCCGC TGGTGTCCGG CAGCACAGGC TTCGCCCGCT GGGGCCAGAC GCCACTCCTG
CTGCTGTGCA CCATCATCTT AATCGGCGCC GTGATCCGCA GACTAAGGCT CTAG
 
Protein sequence
MLLRLRAIAH HPVIRLVLAY LAGASTALAF APYALWPIYP LAMAFALWHS RRLTPKQTFL 
YWLSFGFGSF SVGISWVHVS IDTYGGLPLI ASLGLMAILA LYLALYPALA AYLSIKLVPK
SLTLRFLAVF PAAWVLTEWA RGWVLTGFPW LWGGYSQTNG PLAPLASNIG ALGLSLVLAM
IAGALALAFT HSAEGQGSNG VSSNGVSSNR PRSLSLQAAP LLIITSLAGL GSFASAQLSP
ITPTGKSVKV ALVQGNIAQS MKWQPEALWP TMIKYMDLSR QSLADTDLFI WPEAAIPAPE
YMVEEFLDNA NKVANLNNSA IITGIISKQQ NRFYNSLIVL GNHQQLQQES ADYRGDGSNE
FRKHHLLPIG EFVPLEDLLR PLAPFFNLPM SSFARGDFQQ PNLDAVGHQL APAICYEIAF
PEQLRANVNA GTELLLTVSN DAWFGRSNGP LQHMEIAQMR AIELGRPLLR ATNNGITAVV
DSQGKITHSL PQFETGVLKA EVPLVSGSTG FARWGQTPLL LLCTIILIGA VIRRLRL