| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2032 |
|---|
| Symbol | |
|---|
| ID | 4923871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2344517 |
|---|
| End bp | 2346445 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640163605 |
|---|
| Product | threonyl-tRNA synthetase |
|---|
| Protein accession | YP_001094157 |
|---|
| Protein GI | 127512960 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0441] Threonyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0621532 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000404638 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTAA TTACACTTCC TGATGGCAGC AAGCGCGAGT TTGCTAACGC CGTTTCTACC
CTAGATGTCG CCGCGGACAT AGGTCCTGGT CTCGCAAAAG CCTGTATCGC AGGTCGCGTC
AATGGCGAGC TGAAAGATGC TTGCGACTTG ATTGAGACAG ATGTCGATCT CGCTATCATC
ACCGTAAAAG ACGATGAAGG GGTAGAGATC TTACGTCACT CTTGTGCTCA CCTATTGGGT
CACGCCATTA AGCAGATGTG GCCTGAAACC AAGATGGCCA TCGGCCCGGT GATCGATAAC
GGTTTCTACT ATGACGTGGA TCTCGACCAT AAGCTGACCG AGGAAGATGT AGCCGAGCTA
GAAAAGCGTA TGCTGGCACT GGCTAAGACA AACTATGATG TGGTTAAGCG CGTCGTCAGC
TGGCAAGAAG CCCGTGACAC TTTCGAATCA CGCGGCGAAA GCTACAAGAT GGCTATCTTG
GATGAGAACA TCAGCAAAGA TGACCAGCCT GCGCTCTATC ATCACGAAGA ATATACCGAC
ATGTGTCGTG GCCCCCATGT GCCTAACATG AAGTTCTGTC ATCACTTCAA ACTGATGAGT
GTTGCTGGTG CCTACTGGCG TGGTAACTCA GACAACAAGA TGCTGCAGCG TATCTATGGT
ACGGCCTGGG CAGACAAGAA GGCCCTTAAG GCGCATCTGA CTCGCCTTGA AGAAGCGGCT
AAGCGCGACC ATCGTAAGAT AGGTAAGCAG CTTGATCTGT ACCATATGCA GGAAGAAGCA
CCAGGCATGG TGTTCTGGCA CAACGATGGT TGGAGTCTGT TCCTCGAGCT TGAAAGATTC
ATTCGTCAGA AACTGGGTCA GTACACCTAT CAGGAGGTGA AAGGCCCCTT GATGATGGAC
CGCGTATTGT GGGAGCGCAG TGGTCACTGG GATAAGTATT CCGAAGCCAT GTTCACTACT
CACTCTGAAA ACCGTGAGTA CGCGGTGAAG CCGATGAACT GCCCAGGTCA CGTGCAGATA
TTTAACCAAG GTCTCAAGTC TTATCGCGAT CTGCCACTGC GTATGGCTGA GTTTGGTTGT
TGTCACCGTA ACGAGCCATC GGGTTCTCTA CACGGCTTGA TGCGCGTTCG TGGTTTTACC
CAAGATGATG CCCATATCTT CTGTACCGAA GAGCAGGTGC AACAAGAGGT GAGTGGCTGT
ATCAAGATGG TCTACGACAC CTATGCAACC TTTGGTTTCC ACGATATCGT GGTGAAACTC
TCTACCCGTC CAGAGAAGCG TATCGGTGAC GATGCCATGT GGGACAGAGC AGAGCAGGCG
CTGATGGATG CGCTGAAAGC CAATGACATC GAGTATGAGA TCCTACCGGG CGAAGGTGCC
TTCTATGGTC CTAAGATCGA ATTTACGCTC CATGACTGCT TAGACAGGGC ATGGCAGTGC
GGTACAGTGC AGCTTGATTA CGCCTTGCCT GGACGTCTAG GCGCGACTTA TGTTGCCGAA
GATAACAGCC GTCAAACGCC TGTGATGATC CACCGTGCGA TTCTAGGCTC TCTGGAGCGT
TTCCTAGGGA TCCTGATCGA GGAATACGCA GGTAAGTTCC CAACCTGGTT GGCACCGGTT
CAAGCCGTTG TGATGAATAT TACTGACAAA CAGTCTGAAT ATGTTGACGA AGTGGTCAAA
TTATTTAAAG ATCAGGGAAT TCGTGCCTCG AAAGACTTGA GGAATGAAAA GATTGGCTTT
AAAATACGCG AACACACCCT AAGGCGTGTT CCCTATCTAT TGGTCGTGGG CGATCAAGAG
ATGGAAAATA GGGAAGTCGC GGTGCGAACC AGAGATGGTG TTGACCTAGG TAAGATCAAA
ATCGATCAAT TTGCTGCCAT GGTTAAAGAA CAGATTTCGC TCCGTAGTCT AAATTTGTTG
GAGGAATAG
|
|---|
| Protein sequence | MPVITLPDGS KREFANAVST LDVAADIGPG LAKACIAGRV NGELKDACDL IETDVDLAII
TVKDDEGVEI LRHSCAHLLG HAIKQMWPET KMAIGPVIDN GFYYDVDLDH KLTEEDVAEL
EKRMLALAKT NYDVVKRVVS WQEARDTFES RGESYKMAIL DENISKDDQP ALYHHEEYTD
MCRGPHVPNM KFCHHFKLMS VAGAYWRGNS DNKMLQRIYG TAWADKKALK AHLTRLEEAA
KRDHRKIGKQ LDLYHMQEEA PGMVFWHNDG WSLFLELERF IRQKLGQYTY QEVKGPLMMD
RVLWERSGHW DKYSEAMFTT HSENREYAVK PMNCPGHVQI FNQGLKSYRD LPLRMAEFGC
CHRNEPSGSL HGLMRVRGFT QDDAHIFCTE EQVQQEVSGC IKMVYDTYAT FGFHDIVVKL
STRPEKRIGD DAMWDRAEQA LMDALKANDI EYEILPGEGA FYGPKIEFTL HDCLDRAWQC
GTVQLDYALP GRLGATYVAE DNSRQTPVMI HRAILGSLER FLGILIEEYA GKFPTWLAPV
QAVVMNITDK QSEYVDEVVK LFKDQGIRAS KDLRNEKIGF KIREHTLRRV PYLLVVGDQE
MENREVAVRT RDGVDLGKIK IDQFAAMVKE QISLRSLNLL EE
|
|---|
| |