Gene Shew_1937 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1937 
Symbol 
ID4921471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2237876 
End bp2239003 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content52% 
IMG OID640163506 
Productpeptidase M14, carboxypeptidase A 
Protein accessionYP_001094062 
Protein GI127512865 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2866] Predicted carboxypeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.568911 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0124059 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAATCA GTGCCAATTT TGACGGCGGT AATATTGAGG TCATCAACCA AGATGATATC 
AATAATGTGC AACTGGCCAT TAGACCCGAT GAAGGGGGCG AGTTTTTCCA GTGGTTCAAT
TTTCGTCTGC AAGGTGAAGT AGGCCAGCGC TATACCCTAA ATATCATCAA CGCGGGCCAA
GCCTCTTACA CTAAGGGCTG GGAAGACTAT CAGGCCGCGG CCACCTACGA CAGGCAGCAA
TGGTTCCGCC TGCCGACCCA GTATCAAGAT GGCAAACTTA CCATAGAGGT CGAGCTGGAT
TGCGAGATGA TCCAAATCGC CTATTTCGCA CCCTATAGCT ACGAGCGTCA TCAGGATCTG
CTTAGCGCCG TTCAGGTGCA TCCACTCGTC TCACTCGAGC ATCTGGGTAA AACCTTAGAC
GATCGCGACA TGACCCTGGT TAAGGTGGGT GATGAAGATG AAGAGAAAGC TAAGATCTGG
ATCACCGCAC GTCAACATCC GGGTGAAACC ATGGCCGAGT GGCTGGTGGA AGGCCTGCTA
AATAATCTTC TCGATGGCGA TTGTCCGACG GCCAAGGCGC TGCTGGATAA GGCCAACTTC
TATATCGTAC CTAACATGAA CCCGGATGGC GGCGTACGTG GCCACCTGAG AACCAATGCT
AAAGGCGTTA ACCTAAACCG CGAATGGCAG AGTCCGTCGC TGGAGAAGAG CCCAGAGGTG
TATCATGTGG TCAATCGCAT GAAAGAGACT GGCGTCGATC TCTACTACGA TGTGCATGGC
GATGAAGGCC TGCCATATGT GTTCCTCGCA GGCTGTGAAG GCGTGCCGGG TTACAATCAA
AAGATGGCGG ATCTGCAGGG CGATTTCGTT AAGGCATTGC TGATGGCCAG TGCCGATTTC
CAAGATGAGT TCGGTTATGA TAAAGACGAG CCAGGCCAGG CCAACCTGAC CGTTGCGTCA
AACTGGGTGG CGCAGACCTT CGGCTGTCTC TCTAACACCC TGGAGATGCC ATTTAAAGAT
AATGCCAACA TGCCAGATCC TATGTCTGGT TGGTCGCCTG AGCGTTGCAT CTACCTGGGT
GAGGCGTCAC TGCTCGCCAT GCTGGCCGTG GTCGATAAGC TAAGATAG
 
Protein sequence
MLISANFDGG NIEVINQDDI NNVQLAIRPD EGGEFFQWFN FRLQGEVGQR YTLNIINAGQ 
ASYTKGWEDY QAAATYDRQQ WFRLPTQYQD GKLTIEVELD CEMIQIAYFA PYSYERHQDL
LSAVQVHPLV SLEHLGKTLD DRDMTLVKVG DEDEEKAKIW ITARQHPGET MAEWLVEGLL
NNLLDGDCPT AKALLDKANF YIVPNMNPDG GVRGHLRTNA KGVNLNREWQ SPSLEKSPEV
YHVVNRMKET GVDLYYDVHG DEGLPYVFLA GCEGVPGYNQ KMADLQGDFV KALLMASADF
QDEFGYDKDE PGQANLTVAS NWVAQTFGCL SNTLEMPFKD NANMPDPMSG WSPERCIYLG
EASLLAMLAV VDKLR