Gene Shew_0001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0001 
SymboldnaA 
ID4920637 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp111 
End bp1490 
Gene Length1380 bp 
Protein Length459 aa 
Translation table11 
GC content52% 
IMG OID640161513 
Productchromosomal replication initiation protein 
Protein accessionYP_001092133 
Protein GI127510936 
COG category[L] Replication, recombination and repair 
COG ID[COG0593] ATPase involved in DNA replication initiation 
TIGRFAM ID[TIGR00362] chromosomal replication initiator protein DnaA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000781636 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000344978 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
GTGGCGGTTT CACTTTGGCA GCAATGTATC GGACGACTAC AGGACGAGCT TTCCGCTCAG 
CAATTCAGCA TGTGGATCAG ACCGTTACAA GCCGAAATGG ATGGGGAAAC TCTAGTGCTA
TATGCACCGA ATCGATTCGT ACTCGATTGG GTGAGAGATA AGTACCTCAA TACCATCAAT
CAGTTCTTCA CCGAACAGAT GGGTAGCGAC GCCCCCAAGC TGCGTTTCGA CATCGGTAGT
CGCCCTGCGA GCAAACCGGC AGCGCCGGCT GCCTCGACCA AGAGCCCTGT TGCACCTGCG
GCAAAATCCC CAAGCAAGCC GTCATTTAAT AGCAACGAAC CCGCGGCCAC GGCGAATCAT
AGAAGCAATA TGAATCCCAC CTACCAGTTC GACAACTTCG TCGAGGGTAA GTCTAACCAG
CTGGGTAAGG CAGCCGCCTT GCAGGTGTCT GAAAATCCAG GTGGCGCCTA TAACCCCTTG
TTCCTCTACG GTGGTACGGG CTTGGGTAAG ACTCACCTGC TGCACGCCGT GGGTAATGGC
ATCATCAAGA ACAATCCGAA TGCCAAGGTG GTTTACATGC ATTCCGAGCG CTTCGTACAG
GATATGGTGA AGGCGCTGCA GAACAACGCG ATCGAAGAGT TCAAACGTTA CTACCGTAGC
GTCGATGCGT TGTTTATCGA TGATATTCAA TTCTTTGCTA ACAAAGACAG ATCTCAGGAA
GAGTTCTTCC ATACCTTTAA TGCCCTGCTA GAGGGCAATC ATCAGGTGAT CCTGACTTCA
GATCGCTACC CCAAGGAGAT CGACGGGGTG GAAGATCGCC TCAAGTCGCG CTTCGGTTGG
GGTCTGACGG TGGCCATTGA GCCGCCCGAG CTAGAGACCC GTGTGGCGAT CCTGATGCGT
AAGGCCCAGG AGAGTGGTAT CAACCTGCCC GATGAGGTGG CCTTCTTTAT TGCCAAGCGT
CTGAGATCTA ACGTTCGTGA GCTGGAAGGC GCGCTTAATA GGGTGATCGC CAACGCCAAC
TTTACCGGAC GTCCGATCAC TATCGATTTT GTGCGTGAAG CCCTAAGAGA TCTCTTGGCT
CTGCAGGAAA AATTGGTCAC TATAGACAAC ATTCAGAAAA CCGTAGCTGA ATACTATAAG
ATCAAGATGG CCGACATGCT GTCGAAGCGC CGCTCACGCA GCGTTGCCAG ACCGAGACAG
ATGGCGATGG CATTGTCGAA AGAGTTAACT AACCAGAGTT TGCCCGAGAT TGGCGATGCC
TTTGGTGGCC GTGATCATAC GACAGTGCTA CACGCCTGTC GCAAAATTGC CCAGCTACGT
GAAGAAAGTC ATGACATTAA AGAAGATTAT GCTAACTTAA TCCGTACGCT ATCTTCATAA
 
Protein sequence
MAVSLWQQCI GRLQDELSAQ QFSMWIRPLQ AEMDGETLVL YAPNRFVLDW VRDKYLNTIN 
QFFTEQMGSD APKLRFDIGS RPASKPAAPA ASTKSPVAPA AKSPSKPSFN SNEPAATANH
RSNMNPTYQF DNFVEGKSNQ LGKAAALQVS ENPGGAYNPL FLYGGTGLGK THLLHAVGNG
IIKNNPNAKV VYMHSERFVQ DMVKALQNNA IEEFKRYYRS VDALFIDDIQ FFANKDRSQE
EFFHTFNALL EGNHQVILTS DRYPKEIDGV EDRLKSRFGW GLTVAIEPPE LETRVAILMR
KAQESGINLP DEVAFFIAKR LRSNVRELEG ALNRVIANAN FTGRPITIDF VREALRDLLA
LQEKLVTIDN IQKTVAEYYK IKMADMLSKR RSRSVARPRQ MAMALSKELT NQSLPEIGDA
FGGRDHTTVL HACRKIAQLR EESHDIKEDY ANLIRTLSS