| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2013 |
|---|
| Symbol | |
|---|
| ID | 5373374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2400416 |
|---|
| End bp | 2401354 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640830217 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001366219 |
|---|
| Protein GI | 153000538 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000207825 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGATCA CCTTAAGACA ACTGGCGGTA TTTGAGGCTG TGGCACGTAG CGGCCAAGTC
GCAAAGGCGG CGGAGCAAGT TAATTTATCA CCACCTGCCA CTTCTATGGC CTTGGCTGAG
TTAGAAAAAC AGCTTAATGC CCGCCTATTC GAGCGCATTG GCAATCGATT ACAGCTGAAC
TCGCAGGGCA ATTTACTGTT GCCACTGGCG ACGGATTTAT TGCACCGTGT CGAGCAAATT
GAGCAGGCAT TTACCTACCA TGGTGGCGAT TTGGTTGGGC GGTTAAGTAT CAGTGCCAGT
TCGACCATAG GTAACTATTT GATGGCGAAA GCCGCAGTGG CATTTTGTCA GCAGCACACT
CAAACCCATG TGGATGTGGC GATCACAAAT ACTCAAGATG TGATCCAAGC GGTTGCGCAG
TTCCGATCTG AAATGGGCTT TATCGAAGGT CATTGCACCG ATAATCGTTT GAGTGTTGAA
GCTTGGCATA AGGATAGGCT GCTGGTGTTT TGTCATCCGG CGCATCCTCT GGCGGGAAAA
GTGGTTAAAC CGGCGCAAGT GAGAGGCCAG TCATGGGTGT TACGTGAAGA AGGCTCGGGC
ACTCGTGAGT ATTTTGTCAA TGCTGCCAAT GAGTTGGATA TGCAGCCAGA AGCTAAGTTC
TGCTTTACTA CGCCGGATGC GATTAAACTG GCGGTGAAAC AAGGTGCTGG GCTTGGGGTG
TTATCTGAGC TGGCGCTGGA GAAAGAAATC AGCCGCAAAG AGTTAGCGTT AGTCACGATT
GAGGGATTAG TGCTGGAGCG GCAGTTTTAT CGCATCACCC ATAAGAGCCG TCAGGCGACA
TCCCTTGGCC AAGCTTTTGT GCAGTTCTGT GAGAATTTTT TCAATATCGC AGGGGTGGAA
CCAAATAAGC CGTTTGATAG CAATGGCCAT ATGCAGTGA
|
|---|
| Protein sequence | MRITLRQLAV FEAVARSGQV AKAAEQVNLS PPATSMALAE LEKQLNARLF ERIGNRLQLN
SQGNLLLPLA TDLLHRVEQI EQAFTYHGGD LVGRLSISAS STIGNYLMAK AAVAFCQQHT
QTHVDVAITN TQDVIQAVAQ FRSEMGFIEG HCTDNRLSVE AWHKDRLLVF CHPAHPLAGK
VVKPAQVRGQ SWVLREEGSG TREYFVNAAN ELDMQPEAKF CFTTPDAIKL AVKQGAGLGV
LSELALEKEI SRKELALVTI EGLVLERQFY RITHKSRQAT SLGQAFVQFC ENFFNIAGVE
PNKPFDSNGH MQ
|
|---|
| |