Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1166 |
Symbol | |
ID | 5372591 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 1391453 |
End bp | 1392553 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640829365 |
Product | extracellular solute-binding protein |
Protein accession | YP_001365381 |
Protein GI | 152999700 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0000290123 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCTAT TTAATAAGAT GACCACTCTA GCTCTGGTAA CTGCGAGCGT ATTAGCGAGC GCAGCGGCCC AAGCGGAAGA AGTGGTTCGC GTGTATAACT GGTCAGATTA TATCGCGGAA GATACCTTAG AAAACTTCAA GAAAGAAACG GGCATTCGGG TAATTTACGA TGTGTTCGAT AGTAACGAAG TGCTTGAGGC TAAATTACTG TCTGGTCGTA GTGGCTACGA TATCGTTGTC CCCTCTAACC ACTTTCTCGC TAAGCAAATC AAAGCGGGTG CTTTCAAACC TTTAGATCGC GCTAAGCTAC CTAACTTCAA AAATTTAAAT CCAGCCCTGA TGAAGCTACT TGAGAAAGCC GATCCGGGTA ACCAGTATGC CGTGCCTTAT TTATGGGGAA CCAATGGTAT TGGTTACAAC ATAGATAAAG TGAAAGCGGC TGTGGGTGAA GATGCACCAT TCAACTCAAT GGAACTGATC TTCAATCCTA AATATGCTGA AAAAATCTCT AAGTGTGGCT TTGCTATGCT GGACTCTGCC GATGATATGG TGCCCCAAGC ACTGATTTAT TTAGGTTTAG ATCCAAATAG TTCCAACCCG AGCGATTATG AAAAAGCCGG TGAGTTACTA GAAATAATCC GTCCTTACGT GACCTATTTC CACTCATCTC GCTATATTTC CGACTTAGCA AACGGTGACA TTTGTGTGGC CTTTGGTTTC TCTGGCGACG TATTCCAAGC TAAAGCACGT GCTGAAGAGG CGGGTAATGG TAATAAGATT GGTTACTCGA TTCCAAAAGA AGGCGCCAAC CTGTGGTTTG ATATGTTAGC TATCCCAGCG GATTCGACTA ACGCAGATAA TGCACTGACG CTGATTAACT ATTTCCTCCG TCCAGAAGTC ATAGCGCCTA TCTCTAACTA TGTAGCCTAT GCTAACCCGA ACGATCCTGC ACAACCTCTG GTTGATGAGG CTATCCGCAC CGATCCCGCG ATTTATCCAC CACAAGAAGT GTTAGATAAA CTTTATATTG GTGAAATCCG TCCTTTGAAA ATCCAACGCG TATTAACCCG TGTTTGGACC AAAGTGAAGT CAGGACAATA G
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Protein sequence | MKLFNKMTTL ALVTASVLAS AAAQAEEVVR VYNWSDYIAE DTLENFKKET GIRVIYDVFD SNEVLEAKLL SGRSGYDIVV PSNHFLAKQI KAGAFKPLDR AKLPNFKNLN PALMKLLEKA DPGNQYAVPY LWGTNGIGYN IDKVKAAVGE DAPFNSMELI FNPKYAEKIS KCGFAMLDSA DDMVPQALIY LGLDPNSSNP SDYEKAGELL EIIRPYVTYF HSSRYISDLA NGDICVAFGF SGDVFQAKAR AEEAGNGNKI GYSIPKEGAN LWFDMLAIPA DSTNADNALT LINYFLRPEV IAPISNYVAY ANPNDPAQPL VDEAIRTDPA IYPPQEVLDK LYIGEIRPLK IQRVLTRVWT KVKSGQ
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