Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_0555 |
Symbol | |
ID | 5373108 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 639914 |
End bp | 641281 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640828760 |
Product | major facilitator transporter |
Protein accession | YP_001364786 |
Protein GI | 152999105 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000065492 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTAACA ACGGACTTTC GGGTACTGAG AAAAAAGTCG CGTTTTCTTT AGCCAGTGTA TTTGGTTTAC GCATGATGGG CTTGTTTATG ATCATGCCCG TCTTTGCACT TTATGGTCAG CACCTCGAAG GCTTCTCGCC GCTGTGGGTC GGTATTGCTA TCGGCGCCTA CGGTCTGACT CAAGCTGTGC TGCAAATCCC TATGGGGATT TTATCTGACA AATATGGTCG CAAGCCGATT ATCCTTATCG GTCTGGTGCT TTTTGCCATT GGTAGCTTGA TTGCCGCCAA CGCTGATTCG ATTTACGGCG TGGTGTTTGG GCGCGCAGTG CAGGGCATGG GCGCGATTGC CGCTGCCGTG TTAGCACTGG CGGCGGATTT AACCCGCGAT GAACAGCGTA CTAAGGTCAT GGCGATTATC GGTATGTGTA TCGGCGGCTC TTTTGCGCTG TCCTTACTGG TCGGCCCGAT TGTGGCACAA CATGTGGGCT TATCAGGCCT ATTCTTCCTC ACGGCGATTC TCGCTGTGAC GGGCATGTTG ATCGTGCAAT TTTTAGTACC GAATCCGATT TCCCACGCGC CTAAGGGCGA CACGTTAGCC ACGCCTGCCA GACTCAAGCG TATGTTGACC GATCCCCAAC TGTTTAGACT CGATGCGGGG ATCTTTATTC TGCATTTAGT GTTAACCGCG GTATTTGTGG CCTTGCCGCT GGATCTGGTG GATGCGGGGC TCGTGAAAGA AAAACACTGG ATGCTGTATT TCCCCGCTTT TGTGGGCGCG TTTTTCCTGA TGGTGCCGTT AATTATCATA GGGGTTAAAC GTAAGAATAC TAAAGCTATG TTCCAAATTG CCTTAGTGAT CATGATAGTG GCGCTGCTGG CTATGGCTTT ATTCTCTAAC AACTTATGGG TGTTGAGCTT TGCCGTGGTG CTGTTTTTCA CTGGCTTTAA CTATTTAGAA GCCTCACTGC CCAGTTTGAT TGCCAAATTT TGCCCCGTTG GCGAAAAAGG CTCGGCCATG GGCGTGTATT CCACTAGCCA GTTTTTAGGG GCCTTTTGTG GTGGTATGCT GGGCGGTGGC GCCTTCCAAT TAGTGGGCGC GGTCGGGGTG TTTATTGTTG CAGTGATCTT AATGTCTATC TGGTTATTCC TGACATTGGG CATGGAAAAT CCCGTGCTGT TAAAGAGTTA CACCTTAGAA GCCGAAGTCA AAGACAAGGC GCAAGCGCGG GATATGGCGG CTCAGTTATC ACAGCTGATG GGTGTCGTCG AAGCGATCGT CGTGCTGGAC GAGAAAGTGG CTTACTTAAA GGTTGATGAG CATTTCGATT TAAGAGAAGC ACGAGCTGTG TTAGGCTCTG CTCAATAA
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Protein sequence | MGNNGLSGTE KKVAFSLASV FGLRMMGLFM IMPVFALYGQ HLEGFSPLWV GIAIGAYGLT QAVLQIPMGI LSDKYGRKPI ILIGLVLFAI GSLIAANADS IYGVVFGRAV QGMGAIAAAV LALAADLTRD EQRTKVMAII GMCIGGSFAL SLLVGPIVAQ HVGLSGLFFL TAILAVTGML IVQFLVPNPI SHAPKGDTLA TPARLKRMLT DPQLFRLDAG IFILHLVLTA VFVALPLDLV DAGLVKEKHW MLYFPAFVGA FFLMVPLIII GVKRKNTKAM FQIALVIMIV ALLAMALFSN NLWVLSFAVV LFFTGFNYLE ASLPSLIAKF CPVGEKGSAM GVYSTSQFLG AFCGGMLGGG AFQLVGAVGV FIVAVILMSI WLFLTLGMEN PVLLKSYTLE AEVKDKAQAR DMAAQLSQLM GVVEAIVVLD EKVAYLKVDE HFDLREARAV LGSAQ
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