Gene Shew185_0376 details

Gene Information

• Locus tag: Shew185_0376
• Symbol: radC
• ID: 5372807
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 420736
• End bp: 421413
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640828575
• Product: DNA repair protein RadC
• Protein accession: YP_001364608
• Protein GI: 152998927
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2003] DNA repair proteins
• TIGRFAM ID: [TIGR00608] DNA repair protein radc

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.000147811
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCATTA AAGATTGGCC TGAGGGTGAA GGTCCCAGAG ATAAACTGTT ACAAAAAGGG 
GCGGGGCAAC TGTCGGATGC GGAGTTATTG GCGGTATTAC TGCGGAACGG TTTGGCGGGA 
TTAAACGCGG TTGATCTTGC AAGGTCGCTG ATTAGCGAGT TTGGCGGCCT CAGAAACCTG 
CTTTGTGCTC CTCGAAATCA GGTATGTCGA CTTCCGGGCG TAGGACCTGT AAAATACGCC 
CAGCTTCAAG CTGCGGCCGA ATTAGCGCGG CGTGTAGCGC AGGAAAATCT GCAAAGAGGT 
CAAGTTTTAA CAAATCCCGA TTTAACTCGG GACTATTTAA TGAGACAATT GGCCGATCGC 
TCCTATGAAG TGTTCGCAGT TTTACTGCTG GATAGCCAGC ATAGAGTGAT TCAATTTGTC 
GAATTATTCC GCGGTACAAT AGACTCAGCC TCAGTGTACC CACGTGAAGT GGTGAGCTTA 
GTGCTGGAGA AAAAGGCCGC AGCAGTTATA GTTTGTCATA ATCATCCGTC TGGTAATGCC 
GAGCCCAGTC AGGCTGACCG ACGAATAACT GAGCGATTAA AAAATGCGTT AGCAACCATA 
GACGTATCCT TATTGGACCA TATGGTTGTA GGTGATCGAG AGATAGTTTC TTTTGCAGAA 
CGAGGCTGGA TTAATTAA 

 

Protein sequence

MGIKDWPEGE GPRDKLLQKG AGQLSDAELL AVLLRNGLAG LNAVDLARSL ISEFGGLRNL 
LCAPRNQVCR LPGVGPVKYA QLQAAAELAR RVAQENLQRG QVLTNPDLTR DYLMRQLADR 
SYEVFAVLLL DSQHRVIQFV ELFRGTIDSA SVYPREVVSL VLEKKAAAVI VCHNHPSGNA 
EPSQADRRIT ERLKNALATI DVSLLDHMVV GDREIVSFAE RGWIN