Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_27530 |
Symbol | |
ID | 8396641 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 3049009 |
End bp | 3051018 |
Gene Length | 2010 bp |
Protein Length | 669 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644987495 |
Product | predicted membrane protein |
Protein accession | YP_003145100 |
Protein GI | 257065428 |
COG category | [S] Function unknown |
COG ID | [COG4907] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00352231 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGAGAA ACACCTCATA CACACACCTT CCAAAGGGCA GGAGCCTGGG CAGGCTGCAG GTCTTCTCGA AATCCCTCTT GGTGCTTGCC GTCGTCATGG CGGCGGTGCT TGCTCTGTTC ATGTTCATGC GCCCGGCCGA AGCGTACGCC AAGGAATACA CCTGCCCGCA AACCGTCATG AACGCCGACG TGTCCGACGA CGGTACCTTG ACCGTCCAGG AGAACCGCAC CTTCGATTTC GACGGAAGCT TCACGGCGAT CTGGTGGGTG TTCGAGCAGC TCGGCTACGA CGCGCAGATT GTGATCGACA ACGCCGTGGT CACCAACGAT GCTACGGGGG AGTCCCTGGA CCTGGACGAA GTGCCCTTCC AGGAGTATTG GCGCGAGTAC GGCGCCTCCG ACGAACCCGC CTGGACCTGG GACGCCGAGC AGAACACCGT GTACGTGTTC TGCCCCATGG CGGATGGCAC CTACACCATT ACGCTGGAAT GGCACGCCGA GAACATGGCC ACGCTGTATG CCGACACGGG TGAGGTGTAC TGGCAGTTCG TCGGCGGCGA CTGGGCCATA GACTCCTACG ACGTCACGCT GAACCTGCAG CTGCCGGTGC CCGACGGCGA AACCGTCACG GCCGGCGAGA ACGTGCGTGT CTGGGGCCAC GGGCCTTTGG ATGCGACGGT CCATGTGGAC CAGACGGGCC TGGTCACGGC CGATGTCCCC GTTGTTCCGT CGGGCGAGTT CGCCGAGGTG CGCGCGACCA TTCCCACCGA GTGGCTGTCG GGCGTCGCGC CGGGCGCCTA CAACGACCAG AGCGGCACCG AGAAGATGGA CGAGATCCTG GCCGAAGAGC AGGAGTGGGC CGACAAGGCC AACACGCAGC GCATCATGGC CGTGTCGCAC ATGGCCATGG GCATACTCGC TTCCATCGGC TTGATCATCT GGTCGATCGT CATGTTCTTC CGGCATGGGC GGGAATACAG GCTGCCCAAG GACAAATACT GGCGCGACCT GCCGGCCCCC GGCGTGCACC CTGCGGTCAT CAGCCGCCTG TGGTCGTGGA ACCGAGAGGA CAACAACGAC TTCGTGGCCA CGCTCATGCA CCTGTGCAAC ATCGGCGCCA TCCGCATCGA CCCCGGCACC TACCAGCGCA AACGTAAGAC CGTCAGCGAT TACTACATCA CGCGGCTCGA CGGGTGGCAG GACAAGGTGA ACAACAGCCC CATCGACAAG GAGGCCATGC GCATCCTGTT CGACAAGGTC GGACGCGGGG CCGACGCCAT CTGGTTCGGC AACATCGAGG TGTACGGCAA ACAGCACCCC GAATCCCTCG TCAGGATGAT GGATCGGTGG CAGGAAATCG TCACGTCCCA GACCGACCAG CGCGGCTACT TCGAGGACAA CGGGGAGCTG TACTGCTACA CCATGCGTAT CTTTGCGGCT TTGTGCGTCA TCATCGGCGT GTTCTGCTCG ATTATGTTCA TGGAGCTCAT CGAGCTGATC GCCCTGTCCA TCGCGGCGGT GGTCCTGCTC GTGATCAGCT TCTTCATGCC GCGCCGCTCT TGGGTCGCGG CGGAGATCTA CGGCCGATGC GAGGGCCTGC GCAACTGGCT GAAGGACTTC AGCCTGCTCA ACGAGCGGCT TCCCACCGAC GTCAAGGTGT GGGGCGCCTT CATGGTGTAC GCCTACGTTT TCGGGGTGGC GAAGCGCGCC ATGGAGCAGC TTCAGGTAAG CCTGCCGAAC GTGGTTTCCG ACGCCGGTTT CGTGAGCACG TCCACATGGA TGGGGTATCG CAACGGCTAC GTCGTGGGTC CGAACGCGGC GCCGGTCAGC CCCCTCGACA TGTTCTCGAC CATGTATTCC AACACGGTGC GCACAGCCAA GGCGACCATC GCGGCGGCGG AGACCGGCAA CTTCATCGGC GACGTCATGT CTAGCGGCGG CGGCGGTGGC GGCGGATTCT CCGGCGGCGG AGGCGGAGGC TTCGGCGGCG GCGGTGGCGG CGCACGCTAA
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Protein sequence | MRRNTSYTHL PKGRSLGRLQ VFSKSLLVLA VVMAAVLALF MFMRPAEAYA KEYTCPQTVM NADVSDDGTL TVQENRTFDF DGSFTAIWWV FEQLGYDAQI VIDNAVVTND ATGESLDLDE VPFQEYWREY GASDEPAWTW DAEQNTVYVF CPMADGTYTI TLEWHAENMA TLYADTGEVY WQFVGGDWAI DSYDVTLNLQ LPVPDGETVT AGENVRVWGH GPLDATVHVD QTGLVTADVP VVPSGEFAEV RATIPTEWLS GVAPGAYNDQ SGTEKMDEIL AEEQEWADKA NTQRIMAVSH MAMGILASIG LIIWSIVMFF RHGREYRLPK DKYWRDLPAP GVHPAVISRL WSWNREDNND FVATLMHLCN IGAIRIDPGT YQRKRKTVSD YYITRLDGWQ DKVNNSPIDK EAMRILFDKV GRGADAIWFG NIEVYGKQHP ESLVRMMDRW QEIVTSQTDQ RGYFEDNGEL YCYTMRIFAA LCVIIGVFCS IMFMELIELI ALSIAAVVLL VISFFMPRRS WVAAEIYGRC EGLRNWLKDF SLLNERLPTD VKVWGAFMVY AYVFGVAKRA MEQLQVSLPN VVSDAGFVST STWMGYRNGY VVGPNAAPVS PLDMFSTMYS NTVRTAKATI AAAETGNFIG DVMSSGGGGG GGFSGGGGGG FGGGGGGAR
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