Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_21960 |
Symbol | |
ID | 8396085 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 2436161 |
End bp | 2436964 |
Gene Length | 804 bp |
Protein Length | 267 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644986944 |
Product | uncharacterized membrane protein |
Protein accession | YP_003144555 |
Protein GI | 257064883 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00559972 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.002494 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGACTTCG ATTTTCGCAA CTACCCCCTC ACCTGCTCGT TGATCGTCAT CAACGTCGTG GTTTTCGCCG TGCTCGAAGT GCTCGGCATG ACCCAGGGCT ACACGCTGTA CAACGCGGGC GTGCTGACCA CGTCCAGCCT GTTGGACGGC CAGTACTACA CCCTCATCAC GTCGATGTTC CTGCATGGCG GGCTGATGCA TCTGCTTTGC AACATGATCA CGATGTATTA CATCGGCACC GTCATCGAGG ACGTGTTCGG GCCGGTGCGG TTCCTCATCA TCTACTTTTT GTCAGGCATC GCCGGAGGCC TGACGTCCAT GGCGGTCATG ATAGCCGCCG GCGAGAACGG AGGCGTCGTG GGCGCGTCCG GCGCCCTGTT CGGCCTGTTC GGAGCCTACG GCTACCTGCT CGTCCGCGAG CATCGCAAGC CCGTGGTGTT CATGCGCCCG ACCTCGTCTT CGGACCTCAA GGGCTTCTTC GGGTTCTTGG TGTTGAACAT CATCATCGGT CTGACGCCAG GCATCGCCAT GGAGGCGCAC ATCGGCGGCA TGATTTGCGG CCTTTTGGCG TCCATCCCCA TGTACGAGCT GATGCGCGTC GCCGTCCAGC GCGAAATCGA CGCGGGGCAC ATCCCGGCGC CCTACATCCC CAAGCCGAAT CCCGGCTACG ACTACGACGC CGCCACGGCC GCCCACGATG CCGCCATGGC AGCCCAGAAC GACTTCAACC GGCGCTACGA TTCCGCCCGC CCCCATCAGA AGGAAGAGAT GCGCGAAGAG GCCCTCGACC TGGACAAACG ATAG
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Protein sequence | MDFDFRNYPL TCSLIVINVV VFAVLEVLGM TQGYTLYNAG VLTTSSLLDG QYYTLITSMF LHGGLMHLLC NMITMYYIGT VIEDVFGPVR FLIIYFLSGI AGGLTSMAVM IAAGENGGVV GASGALFGLF GAYGYLLVRE HRKPVVFMRP TSSSDLKGFF GFLVLNIIIG LTPGIAMEAH IGGMICGLLA SIPMYELMRV AVQREIDAGH IPAPYIPKPN PGYDYDAATA AHDAAMAAQN DFNRRYDSAR PHQKEEMREE ALDLDKR
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