Gene Shel_16300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_16300 
Symbol 
ID8395520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp1830343 
End bp1831134 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content63% 
IMG OID644986384 
Productpyrroline-5-carboxylate reductase 
Protein accessionYP_003143998 
Protein GI257064326 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0345] Pyrroline-5-carboxylate reductase 
TIGRFAM ID[TIGR00112] pyrroline-5-carboxylate reductase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000034622 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000154585 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTATAAAA TCGGTTTCAT CGGCTGCGGC AACATGGGTT CCGCCATGCT GCGCGGCGTC 
GTGTCCAAGG GCGACGTGGC CCCGTCCGAC ATCATCGTGG CCGAACCCCT TCAGGAGAAG
GCCGATGCTG TGGCGGCCGA GTTCGGCGTG AACGTGACCA CCGACAACAC GGTTGCCGCG
CAGTCCGAGC TGCTGGTCCT GGCTATCAAG CCTCAGGTGT ATGCCGTGGT GCTCGAAGGG
CTTTCCGAAG CCCTGGGACC CGATACGCTT CTTCTGTCGC TTGCCCCCGG CAAAACCCTT
GCCTATCTTG CTGAAGCAAC CAAGTGCACC CGCATCACGC GGCTCATGCC GAACACGCCA
GCGGCGGTGG GAGAGGGCAT GACCTCCGTC GTCTACAACG ACGCCTGCAC CGAAGCGGAC
AAGCAGGCGG TCATGGATTT CGTCACATCG TTCGGACGCG CACAGGTCAT CCCCGAGCAT
CTGATCGACG CGGCAACCGC CATCGCAGGC TGCTCTCCTG CCTATGTATA TATGTTCATC
GAGGCTATGG CCGACGCCGC GGTTATCGAG GGCATGCCCC GCGCGCAGGC CTACCAATAC
GCCGCGCAGG CGGTGCTGGG CTCTGCCAAG ATGGTCATCG AGTCTGGCAA GCACCCTGCC
GAGCTGAAGG ATGCGGTCTG CTCGCCTGGC GGCACCACCA TAGCCGGCCT GCGTGCGTTG
GAGAAGGCCG GGTTCCGCTC GGCAGTCATC GAAGGGCTTG AGGCGACCTG CGAAAAGGCC
CGCAACCTGT AA
 
Protein sequence
MYKIGFIGCG NMGSAMLRGV VSKGDVAPSD IIVAEPLQEK ADAVAAEFGV NVTTDNTVAA 
QSELLVLAIK PQVYAVVLEG LSEALGPDTL LLSLAPGKTL AYLAEATKCT RITRLMPNTP
AAVGEGMTSV VYNDACTEAD KQAVMDFVTS FGRAQVIPEH LIDAATAIAG CSPAYVYMFI
EAMADAAVIE GMPRAQAYQY AAQAVLGSAK MVIESGKHPA ELKDAVCSPG GTTIAGLRAL
EKAGFRSAVI EGLEATCEKA RNL