Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_16300 |
Symbol | |
ID | 8395520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 1830343 |
End bp | 1831134 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644986384 |
Product | pyrroline-5-carboxylate reductase |
Protein accession | YP_003143998 |
Protein GI | 257064326 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0345] Pyrroline-5-carboxylate reductase |
TIGRFAM ID | [TIGR00112] pyrroline-5-carboxylate reductase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000034622 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.000154585 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTATAAAA TCGGTTTCAT CGGCTGCGGC AACATGGGTT CCGCCATGCT GCGCGGCGTC GTGTCCAAGG GCGACGTGGC CCCGTCCGAC ATCATCGTGG CCGAACCCCT TCAGGAGAAG GCCGATGCTG TGGCGGCCGA GTTCGGCGTG AACGTGACCA CCGACAACAC GGTTGCCGCG CAGTCCGAGC TGCTGGTCCT GGCTATCAAG CCTCAGGTGT ATGCCGTGGT GCTCGAAGGG CTTTCCGAAG CCCTGGGACC CGATACGCTT CTTCTGTCGC TTGCCCCCGG CAAAACCCTT GCCTATCTTG CTGAAGCAAC CAAGTGCACC CGCATCACGC GGCTCATGCC GAACACGCCA GCGGCGGTGG GAGAGGGCAT GACCTCCGTC GTCTACAACG ACGCCTGCAC CGAAGCGGAC AAGCAGGCGG TCATGGATTT CGTCACATCG TTCGGACGCG CACAGGTCAT CCCCGAGCAT CTGATCGACG CGGCAACCGC CATCGCAGGC TGCTCTCCTG CCTATGTATA TATGTTCATC GAGGCTATGG CCGACGCCGC GGTTATCGAG GGCATGCCCC GCGCGCAGGC CTACCAATAC GCCGCGCAGG CGGTGCTGGG CTCTGCCAAG ATGGTCATCG AGTCTGGCAA GCACCCTGCC GAGCTGAAGG ATGCGGTCTG CTCGCCTGGC GGCACCACCA TAGCCGGCCT GCGTGCGTTG GAGAAGGCCG GGTTCCGCTC GGCAGTCATC GAAGGGCTTG AGGCGACCTG CGAAAAGGCC CGCAACCTGT AA
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Protein sequence | MYKIGFIGCG NMGSAMLRGV VSKGDVAPSD IIVAEPLQEK ADAVAAEFGV NVTTDNTVAA QSELLVLAIK PQVYAVVLEG LSEALGPDTL LLSLAPGKTL AYLAEATKCT RITRLMPNTP AAVGEGMTSV VYNDACTEAD KQAVMDFVTS FGRAQVIPEH LIDAATAIAG CSPAYVYMFI EAMADAAVIE GMPRAQAYQY AAQAVLGSAK MVIESGKHPA ELKDAVCSPG GTTIAGLRAL EKAGFRSAVI EGLEATCEKA RNL
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