| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_16260 |
|---|
| Symbol | |
|---|
| ID | 8395516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | - |
|---|
| Start bp | 1826306 |
|---|
| End bp | 1828417 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644986380 |
|---|
| Product | translation elongation factor 2 (EF-2/EF-G) |
|---|
| Protein accession | YP_003143994 |
|---|
| Protein GI | 257064322 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0480] Translation elongation factors (GTPases) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00484] translation elongation factor EF-G |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000508186 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00001782 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATA AGAAAACATC CCTCAAGAAT ACGCGCAACA TCGGCATCAT GGCCCACATC
GACGCGGGCA AGACGACGAC CACCGAGCGT ATTCTGTATT ACACCGGCAA GACCCATAAG
ATCGGTGAGG TGCATGAGGG CGCTGCAACC ATGGACTGGA TGGTCCAGGA GCAGGAGCGC
GGCGTAACCA TTACGTCCGC CGCTACCACC ACCTTCTGGG AGAAGGATGG CGTCGAGCAC
CGCATCCAGA TCATCGACAC CCCGGGCCAC GTGGACTTCA CGGCCGAGGT CGAGCGCTCC
CTGCGCGTTC TTGACGGCGC CGTCGCCGTC TTCGACGCTG TCGCCGGCGT TCAGCCCCAG
TCCGAAACCG TTTGGCGCCA GGCTCATCGT TACGGCGTTC CCCGCATCGC CTACATCAAC
AAGTACGACC GCGTCGGTTC CGACTTCTTC CATGCTATCG ACACCATGAA GACCCGTCTG
GACGCCCCCG CAGTCGCCGC CCAGATCCCC ATGGGCGCAG AGGACAACTT CTGGGGCCTG
GTGGACCTGG TTACCATGAC CGCCTGGGAC TTCAAGGCTG ACGATAAGGG CATGACCTAT
CCCGAGCAGC TGCCTGAGAT TCCTGCCGAG TTCGTCGAGC AGGCTCAGGA GTACCGCCAG
ATCCTCGTTG ACGCCGCCGC CGACTTCGAC GACGACCTCA TGGAGAAGGT CCTGATGGAC
GAGGAGTTCA CCGTCGAGGA GCTCAAGAAC GCCATCCGCA AGGGCACCAT CGCCTGCGAG
CTGAACCCTG TTTTCGTCGG TTCTTCCTAC AAGAACAAGG GCGTCCAGGA ACTGCTCGAC
GCAGTGTGCG ACTACCTGCC CAGCCCGGTC GACGTGCCCG CCATCAAGGG CACCATCCCC
GGCAAGGACG AGGAAGGCGA GCGCCCCTCC GACGAGAAGG CTCCCTTCGC AGCCTTGGCA
TTCAAGATCA TGACCGACCC CTACGTCGGC AAGCTGACCT ACTTCCGCGT GTACTCCGGC
AAGGTCGAAG CTGGCTCTTA CGTCCTGAAC TCCACGAAGG ACAAGAAGGA GCGCATCGGC
CGCATCCTGG AGATGAACGC CAACGAGCGT ATCGACCGCG ACTACTGCGC CGCCGGTGAC
ATCGTCGCCG CCGTCGGTCT GAAGAACACC ACCACGGGTG ACACGCTGTG CGCCGAGAAC
GCACCCATCA TCCTGGAGTC CATGGAGTTC GCCGACCCGG TTATCGACAT CGCCATCGAG
CCCAAGACCA AGGCTGAGCA GGACAAGATG GGCATCGCCC TTCAGAAGCT CGCCGAAGAG
GACCCGACGT TCCGCGTGTC CACCAACCAT GAGACCGGCC AGACCATCAT CGCCGGCATG
GGCGAGCTGC ACCTGGAGAT CATCGTCGAC CGTCTGCTCC GCGAGTTCAA GGTCGAGGCT
AACGTCGGCA AACCGCAGGT TGCCTACCGC GAGAAGGCCA CCGTGCCTGC TCTCAACGTT
CAGGGCAAGT TCGTCCGCCA GTCCGGCGGC CGCGGCCAGT ACGGCGACTG CGTCATCAAC
ATGTACCCTG CCGAGCCTGG CGAGGGCTAC AAGTTCGAGA ACAAGATCGT CGGCGGCGTT
GTGCCCAAGG AGTACATCCC GTCCATCGAT AAGGGCATCC AGGAGGCTCT GGAGTCCGGC
GTTCTGGCCG GCTTCCCGGT CGAGGACGTC CGCGTCGAGC TCATCGACGG TTCTTACCAT
GACGTCGACT CCTCCGAAGC CGCCTTCAAG GTTGCCGGCT CCATGGCCAT CAAGGCCGCT
CTGCGCAAGG GCCAGCCGGT CATCCTCGAG CCGGTCATGG CTGTCGAGGT CGAGACCCCC
GAAGAGTACA TCGGCTTCGT CATGGGCGAC ATCCCGAGCC GCCGTGGCCT GATCCAGGGC
CAGGAGCAGC GTGGCAACGC CGTCTGCATC AGCGCCAAGG TTCCGCTGAG CAACATGTTC
GGCTACGCCA CCGACCTGCG TTCCGGCACT CAGGGCCGTG CTGTGTACAC CATGCAGTTC
GACTCTTACG AGCCTGTGCC GAAGAGCGTT CAGGAAGAAA TCATCAGCAA GGCTGGCGGA
AGCGCTTCTT AA
|
|---|
| Protein sequence | MADKKTSLKN TRNIGIMAHI DAGKTTTTER ILYYTGKTHK IGEVHEGAAT MDWMVQEQER
GVTITSAATT TFWEKDGVEH RIQIIDTPGH VDFTAEVERS LRVLDGAVAV FDAVAGVQPQ
SETVWRQAHR YGVPRIAYIN KYDRVGSDFF HAIDTMKTRL DAPAVAAQIP MGAEDNFWGL
VDLVTMTAWD FKADDKGMTY PEQLPEIPAE FVEQAQEYRQ ILVDAAADFD DDLMEKVLMD
EEFTVEELKN AIRKGTIACE LNPVFVGSSY KNKGVQELLD AVCDYLPSPV DVPAIKGTIP
GKDEEGERPS DEKAPFAALA FKIMTDPYVG KLTYFRVYSG KVEAGSYVLN STKDKKERIG
RILEMNANER IDRDYCAAGD IVAAVGLKNT TTGDTLCAEN APIILESMEF ADPVIDIAIE
PKTKAEQDKM GIALQKLAEE DPTFRVSTNH ETGQTIIAGM GELHLEIIVD RLLREFKVEA
NVGKPQVAYR EKATVPALNV QGKFVRQSGG RGQYGDCVIN MYPAEPGEGY KFENKIVGGV
VPKEYIPSID KGIQEALESG VLAGFPVEDV RVELIDGSYH DVDSSEAAFK VAGSMAIKAA
LRKGQPVILE PVMAVEVETP EEYIGFVMGD IPSRRGLIQG QEQRGNAVCI SAKVPLSNMF
GYATDLRSGT QGRAVYTMQF DSYEPVPKSV QEEIISKAGG SAS
|
|---|
| |