Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_03250 |
Symbol | |
ID | 8394217 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 393966 |
End bp | 394826 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644985095 |
Product | transposase |
Protein accession | YP_003142741 |
Protein GI | 257063069 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00459877 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATCAGGG AGCTTTCAGG GGAAGGGCAC AAGCTGGCTG ATCTCCTGGC CGCGTCCGGC GTGCCCGCAT CGACCTACCA CTACAACAAG GCCAAGGGGC CGAAGGCGCC GACCAGGCCG GAGCTGTGGG AGGACGTTGC AGAGATCTTC TCGCGCACGG CCAACGGCTG CGGCCACAGG CAGATCGCGA TGTGCCTGCG CGCCAAGAAG GGCGTCTGCA TAGCCGACAA GACCGCGCTC AAGATCATGC ACGAGATGGG CGTCAGCTGC GGCATAAGGC GCGAGACAGA CTACCACAAG TACAACTCCT ACAAGGGCGT CGTCGGCGAG ACGTTCGAGA ACCTGCTCGA CCGCGACTTC TCCGCCGACG GGCCGTGGCA GAAGCTGGGG ACCGACGTCA CCGAGTTCAA GCAGGTTTGG GGCAAGGGCT ACCTCGCGCC GGCCTACGAT TTCGGCAGCA AGGAGATCGT CGCCTGGTCG ATATCGGAGC ATCCCGACAT GATGCAGCAG AAGGAGATGC TCGCGATGCT GCTGCCCAAG GTGCCGGCGG GATCCAGCCC CATCATGCAA TCGGACATGG GCTGGCAATA CCAGCACGAG TTCTACTGCA ATGCACTCAG GGAAGCCGGG ATAATCCAGA GCATGTCGCG CAAGGGAAAC TGCATAGACA ACGGGGCGAC GGAACAGGTG TTCGGCCACA TCAAGGACGA GTTCTTCAGG GGCCAGGAGT TCCCGGACTT CGAGACGTTT AAGGCCGAGC TGGAGGAGTA CATCATCCAC TGGAACACGA AGAGGAGACA GGTTAAACTC AAGGGACTGA CCCCGGAAGA ATTCCGGAAT CAGTCCCTTC GTGTGGCGTA G
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Protein sequence | MIRELSGEGH KLADLLAASG VPASTYHYNK AKGPKAPTRP ELWEDVAEIF SRTANGCGHR QIAMCLRAKK GVCIADKTAL KIMHEMGVSC GIRRETDYHK YNSYKGVVGE TFENLLDRDF SADGPWQKLG TDVTEFKQVW GKGYLAPAYD FGSKEIVAWS ISEHPDMMQQ KEMLAMLLPK VPAGSSPIMQ SDMGWQYQHE FYCNALREAG IIQSMSRKGN CIDNGATEQV FGHIKDEFFR GQEFPDFETF KAELEEYIIH WNTKRRQVKL KGLTPEEFRN QSLRVA
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