Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_01150 |
Symbol | |
ID | 8394007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 145516 |
End bp | 147090 |
Gene Length | 1575 bp |
Protein Length | 524 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644984888 |
Product | PAS domain-containing protein |
Protein accession | YP_003142538 |
Protein GI | 257062866 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3947] Response regulator containing CheY-like receiver and SARP domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00148391 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACGTACG CCAGCAAGAA CCTGTGCGAC CTGCTCGGCG TTGCGGCCGC GGAGCTGGAA AGCTCCGATG CGGATGCCTA TGCCGCGCAC GTGCACGCCG ATGACCAGGA GGTATACGCC GGGCTTGTGG CGAATGCGGG CAAAGGTCCC GGAACATACA GCGCGCAGTA CCGTCTGGTG ACCGCCGACG GGCGCATGCT TCATACGAAC GACACGCTGA CGGTGGAAAT GACGGAAGAG GGGGAGCTCT CGGGCTATTC TGTTCTTGCC GACATCACCG AACTGACGGG CGAAATCGGC GGCCTGAAGT TTCTCAGCGA CACGGTGCCG TGCGGGTTCA TCAAATACAC GTGCGACACC ACCCCGCAAG TCACCTATAT AAATCAGAAG ATGCTCGAGA TCCTGGGTTT CTCGGAGAAG GACAGGTTCT CGTCGGAATA CCTGGAGATG TGCAAGCGGA ACATCTTTTT GCTGGTGCCG GTTGAGGAGC GGCGGAGGTT CGGCCTGTAT TTGAAGCTGG TTTACCGCCG CGAGGCGCCG ATTGCCGGCG AGATGGCCAT GCTGCGCAGC GACGGGACCC CCGCCTACCT GTTCGGATGG GTCACGAAAA CCGTCAACGA CCAGGGGGTC GAGGAGTTCC AAAGCGTCTG CATGGACGTT ACGGAGCGCC ATTTGGACAA AACGCGGCGG GACGCCGAAC GCTACCTGAC TGCGCTGTCG GAGGCATACG ACCTCATATT CGAATATGAT TTGGGAAGCT GCACGGTAAA GTACCTGTTC GGACGTGGAT TCCCCGAACT GCAATGGGTG CAGGGCATCC CCATGAAGAT GGACGACGTC ACCGACCGCT GGATAGCCAG CACGGTGGAC AGGCAGGACC GCGAGGCGAT GCGGGCGTTC TTTTCGGATT TCTTCCAGAA CAAACCCATG CCCTCGGGCC GGTCTTCCGT AATCCGTTTC GGGATGCAGT CCTCCGATGG GGAAGTGCGG CCATGCAGCG GACAGTTCGT CAAGATCGAC CAGTTCGTGA GCCTGTTTTG CTGCAAGCGC GGTGCGGATG TCGCATCTGA CGGCGCAAAG GGCAATCCTT CTGCAGAAGG TGCTTTGCCG GGCGATGCCG ACGAGGTGCC GCGCGTCCAA ATACGCACCT TCGGATTCTT CGACGTGTTC GTGGACGGCA AGCCCATCGC GTTCAGGAAC GAGAAATCGA AGGAGCTGTT CGCGCTGCTG GTGGATCGCC GCGGCGGCTT CGTGTCGTCG AGCGAGGCGA TATCCTTCTT GTGGGAGGAC GAGCCCGTGA GCCCGGTGAC GCTGTCCCGA TACCGCAAGG TGGCGCTGCG TCTGAAGAAC ATCCTGGACG AATACGCCAT TTCGGACGTG GTGGAGAACG TGAACGGTAA ACGGCGCCTG GCCACCGAGA AGGTGAGCTG CGATTTGTAC GATTACCTGT CCGGACGCGA GGAGTTCGCG CAGCTATTCA AGGGCAGCTA CCTTTCTAAT TACAGTTGGG GAGAAACCAC GCTGGCGGGG TTGCTGGGAG ACGTGTCCCA TGCGACCGAC CGCAACCCTT CTTAA
|
Protein sequence | MTYASKNLCD LLGVAAAELE SSDADAYAAH VHADDQEVYA GLVANAGKGP GTYSAQYRLV TADGRMLHTN DTLTVEMTEE GELSGYSVLA DITELTGEIG GLKFLSDTVP CGFIKYTCDT TPQVTYINQK MLEILGFSEK DRFSSEYLEM CKRNIFLLVP VEERRRFGLY LKLVYRREAP IAGEMAMLRS DGTPAYLFGW VTKTVNDQGV EEFQSVCMDV TERHLDKTRR DAERYLTALS EAYDLIFEYD LGSCTVKYLF GRGFPELQWV QGIPMKMDDV TDRWIASTVD RQDREAMRAF FSDFFQNKPM PSGRSSVIRF GMQSSDGEVR PCSGQFVKID QFVSLFCCKR GADVASDGAK GNPSAEGALP GDADEVPRVQ IRTFGFFDVF VDGKPIAFRN EKSKELFALL VDRRGGFVSS SEAISFLWED EPVSPVTLSR YRKVALRLKN ILDEYAISDV VENVNGKRRL ATEKVSCDLY DYLSGREEFA QLFKGSYLSN YSWGETTLAG LLGDVSHATD RNPS
|
| |