Gene Shel_01150 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_01150 
Symbol 
ID8394007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp145516 
End bp147090 
Gene Length1575 bp 
Protein Length524 aa 
Translation table11 
GC content60% 
IMG OID644984888 
ProductPAS domain-containing protein 
Protein accessionYP_003142538 
Protein GI257062866 
COG category[T] Signal transduction mechanisms 
COG ID[COG3947] Response regulator containing CheY-like receiver and SARP domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00148391 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGTACG CCAGCAAGAA CCTGTGCGAC CTGCTCGGCG TTGCGGCCGC GGAGCTGGAA 
AGCTCCGATG CGGATGCCTA TGCCGCGCAC GTGCACGCCG ATGACCAGGA GGTATACGCC
GGGCTTGTGG CGAATGCGGG CAAAGGTCCC GGAACATACA GCGCGCAGTA CCGTCTGGTG
ACCGCCGACG GGCGCATGCT TCATACGAAC GACACGCTGA CGGTGGAAAT GACGGAAGAG
GGGGAGCTCT CGGGCTATTC TGTTCTTGCC GACATCACCG AACTGACGGG CGAAATCGGC
GGCCTGAAGT TTCTCAGCGA CACGGTGCCG TGCGGGTTCA TCAAATACAC GTGCGACACC
ACCCCGCAAG TCACCTATAT AAATCAGAAG ATGCTCGAGA TCCTGGGTTT CTCGGAGAAG
GACAGGTTCT CGTCGGAATA CCTGGAGATG TGCAAGCGGA ACATCTTTTT GCTGGTGCCG
GTTGAGGAGC GGCGGAGGTT CGGCCTGTAT TTGAAGCTGG TTTACCGCCG CGAGGCGCCG
ATTGCCGGCG AGATGGCCAT GCTGCGCAGC GACGGGACCC CCGCCTACCT GTTCGGATGG
GTCACGAAAA CCGTCAACGA CCAGGGGGTC GAGGAGTTCC AAAGCGTCTG CATGGACGTT
ACGGAGCGCC ATTTGGACAA AACGCGGCGG GACGCCGAAC GCTACCTGAC TGCGCTGTCG
GAGGCATACG ACCTCATATT CGAATATGAT TTGGGAAGCT GCACGGTAAA GTACCTGTTC
GGACGTGGAT TCCCCGAACT GCAATGGGTG CAGGGCATCC CCATGAAGAT GGACGACGTC
ACCGACCGCT GGATAGCCAG CACGGTGGAC AGGCAGGACC GCGAGGCGAT GCGGGCGTTC
TTTTCGGATT TCTTCCAGAA CAAACCCATG CCCTCGGGCC GGTCTTCCGT AATCCGTTTC
GGGATGCAGT CCTCCGATGG GGAAGTGCGG CCATGCAGCG GACAGTTCGT CAAGATCGAC
CAGTTCGTGA GCCTGTTTTG CTGCAAGCGC GGTGCGGATG TCGCATCTGA CGGCGCAAAG
GGCAATCCTT CTGCAGAAGG TGCTTTGCCG GGCGATGCCG ACGAGGTGCC GCGCGTCCAA
ATACGCACCT TCGGATTCTT CGACGTGTTC GTGGACGGCA AGCCCATCGC GTTCAGGAAC
GAGAAATCGA AGGAGCTGTT CGCGCTGCTG GTGGATCGCC GCGGCGGCTT CGTGTCGTCG
AGCGAGGCGA TATCCTTCTT GTGGGAGGAC GAGCCCGTGA GCCCGGTGAC GCTGTCCCGA
TACCGCAAGG TGGCGCTGCG TCTGAAGAAC ATCCTGGACG AATACGCCAT TTCGGACGTG
GTGGAGAACG TGAACGGTAA ACGGCGCCTG GCCACCGAGA AGGTGAGCTG CGATTTGTAC
GATTACCTGT CCGGACGCGA GGAGTTCGCG CAGCTATTCA AGGGCAGCTA CCTTTCTAAT
TACAGTTGGG GAGAAACCAC GCTGGCGGGG TTGCTGGGAG ACGTGTCCCA TGCGACCGAC
CGCAACCCTT CTTAA
 
Protein sequence
MTYASKNLCD LLGVAAAELE SSDADAYAAH VHADDQEVYA GLVANAGKGP GTYSAQYRLV 
TADGRMLHTN DTLTVEMTEE GELSGYSVLA DITELTGEIG GLKFLSDTVP CGFIKYTCDT
TPQVTYINQK MLEILGFSEK DRFSSEYLEM CKRNIFLLVP VEERRRFGLY LKLVYRREAP
IAGEMAMLRS DGTPAYLFGW VTKTVNDQGV EEFQSVCMDV TERHLDKTRR DAERYLTALS
EAYDLIFEYD LGSCTVKYLF GRGFPELQWV QGIPMKMDDV TDRWIASTVD RQDREAMRAF
FSDFFQNKPM PSGRSSVIRF GMQSSDGEVR PCSGQFVKID QFVSLFCCKR GADVASDGAK
GNPSAEGALP GDADEVPRVQ IRTFGFFDVF VDGKPIAFRN EKSKELFALL VDRRGGFVSS
SEAISFLWED EPVSPVTLSR YRKVALRLKN ILDEYAISDV VENVNGKRRL ATEKVSCDLY
DYLSGREEFA QLFKGSYLSN YSWGETTLAG LLGDVSHATD RNPS